The 1999 Meistriliiga was the ninth season of the Meistriliiga, Estonia's premier football league. Levadia won their first title.
League table
Relegation play-offLelle won 4–2 on aggregate and retained their Meistriliiga spot; however, Lelle ceded their league entry to FC Valga both being associate clubs of Flora ==Results==
Results
Each team played every opponent four times, twice at home and twice on the road, for a total of 36 games. First half of seasonSecond half of season ==Top scorers==