At the end of the first stage, a comparison was made between the third placed teams from West and East zones will qualify for the tournament. The best third-placed team from each region advanced to the
2012 AFC U-16 Championship. Due to the varying number of teams per group, teams in different group would have played different number of matches. Therefore, in order to ensure equality when comparing the runner-up teams of all the groups, all teams will be compared across similar number of matches. AFC will decide on the number of matches. In principle, the results of the matches between the runner-up team and the bottom placed team in the group will be considered null and void. ;West Zone In western Zone Saudi Arabia qualified as best third-place finisher. ;East Zone In the Eastern zone Laos qualified as best third-place finisher. ==Qualifiers==