The family Apatemyidae has no sister taxa and has faced much disagreement regarding its origins and affinities. Apatemyids are scarce even in the faunas where they are most often discovered, and constructing a valid taxonomy is challenging since the specimens are typically retrieved in small sample sizes. Early hypotheses for apatemyid affinities include relations to ungulates and rodents, but the most popular early suggestions were classifying them with Insectivora or assigning them to their own order of Apatotheria. It was later proposed that apatemyids belong to the order Cimolesta, which deemed apatemyids more closely related to carnivores than to rodents. However, the relationships of the Apatemyidae continue to be speculated, with connections to other groups like primates being proposed. More valid taxonomic information is known about the genus Apatemys and the species belonging to the genus.
Apatemys has 14 sister taxa also belonging to the family Apatemyidae, including
Apatemyinae, Asiapator, Carcinella, Eochiromys, Frugivastodon, Heterohyus, Jepsenella, Labidolemur, Russellmyinae, Russellmys, Sinclairella, Stehlinella, Teilhardella, Unuchinia, and
Unuchiniinae. There are 13 known species belonging to the genus
Apatemys. The
type species for the genus is
Apatemys bellus, which was named by Marsh (1872), from a type specimen (YPM 13512) consisting of a mandible. The species of the genus
Apatemys belong to the suborder Apatotheria, whose sister taxa are Didelphodonta, Cimolestidae, Palaeoryctida, Pantodonta, Pantolesta, Pentacodontidae, Sarcodontidae and Todralestidae. ==Description==