The club's started their history in the 3rd division on the 2003/04 season where they promoted to Second Division as Champions. The following season they won the second division championship and they were promoted as Second Division Champions to the
Cypriot First Division for the first time in their history. However, the team finished 12th in the
2005–06 season and they were
relegated back to the second division [https://www.rsssf.org/tablesc/cyp06.html. In 2007 the team won the Second Division championship and they were promoted to First Division for the second time. They finished 8th in the
2007–08 first division championship and in the
2008–09 season finished seventh. Few gave APOP Kinyras any chance of clinching silverware that season, although under coach Giorgos Polyviou, manage to create quite a stir when they upset overwhelming favourites and win the
Cypriot Cup final against
AEL Limassol. After the success, the team became the first club from Paphos to win a major trophy since the foundation of the Cyprus Football Association in 1934. After overcoming
AC Omonia in quarterfinals and
APOEL FC in semifinals, the Paphos side withstood some intense AEL pressure before scoring two late goals through
Angelos Efthymiou and
Fangio Buyse to seal a remarkable triumph in Nicosia's GSP Stadium. In their first European game APOP Kinyras played in Vienna on July 30, 2009; losing against
Rapid Wien 2–1 in the first leg of the third qualifying round of the
UEFA Europa League. In the second leg, Rapid needed Trimmel's extra-time goal (2–2) to eliminate the Paphos side, which impressed at the match sending it to overtime, coming from 0–1 down to 2–1 lead with two goals from
Edgar Marcelino and
Sebastián González. In 2011, after 4 consecutive seasons in the first division, a record for the club, they were relegated back to the Cypriot Second Division. In 2012, in after a lot of scandals the club was relegated by CFA and UEFA from the Second to Fourth Division. The same year, after a large bankruptcy the club was dissolved. ==Colours and badge==