Depth zones The regions are divided into benthic depth zones. Along the coastline there are
supratidal, above the high-water mark,
intertidal between high and low water, shallow
photic, or subtidal
shoreface, where there is turbulence and enough light for seaweeds to flourish, down to about 10 m, deep photic, where there is less light, down to about 30 m, and sub-photic (lightless) zones, down to the edge of the continental shelf, which varies from about 400 m in the northern part of the west coast, to 200 m in the Agulhas region, 100 m off Natal, and can be shallow as 50 m in the Delagoa bioregion. The shelf break is defined by the slope angle of the seabed. The offshore regions include upper
slope, from the shelf break down to about 1800 m, lower slope, and
abyss, below 3500 m. The end boundaries of the supratidal zone do not generally coincide with the bioregion boundaries.
Inshore regions Five inshore marine bioregions that extend from the shoreline to the break of the continental shelf were defined. Boundaries between them are difficult to define, and overlaps between regions are accepted, because available species data may indicate large sections of coast with few endemics, and many species are found spread across more than one region.
West coast ;Benguela ecoregion: :This is the region comprising the consolidated Namaqua and South-western Cape bioregions. ; Namaqua bioregion: :This is a cool temperate region between Sylvia Hill just north of
Lüderitz in Namibia to
Cape Columbine. Sylvia Hill is the northern boundary of a large upwelling cell. The bioregion has large-scale intensive upwelling and nutrient rich water, and the cold
Benguela current. The region is known for low oxygen events and it contains extensive mud banks and a relatively wide continental shelf. It is a productive bioregion and supports major commercial fisheries. In the 2011 assessment it was combined with the South-western Cape bioregion to form the Benguela ecoregion. ; South-western Cape region: : This region has a relatively narrow continental shelf. There is a change in geology at Cape Columbine which marks the northern extent of the exposed granite, and there is less offshore mud habitat south of this break. This region includes the two underwater canyons, Cape Point Valley and Cape Canyon, and there are large areas of rocky reef. The change in biology at Cape Columbine is indicated by change in seaweed and intertidal communities. There is less tendency for oxygen deficient bottom water than in the area further north. This region supports trawl and longline fisheries for hake, pelagic fisheries for anchovy, pilchard and roundherring, and a longline shark fishery. The break at the south-eastern end of the region is at Cape Point, where it is distinct in the inshore and tidal habitats, but the change in deeper water tends obliquely to the south-east, and is more diffuse, due to mixing of the Benguela and Agulhas currents between these regions. In the 2011 assessment it was combined with the Namaqua bioregion to form the Benguela ecoregion.
South coast ; Agulhas region: : The region from Cape Point to the Mbashe river is known as the Agulhas bioregion. The south coast comprises a warm temperate component from Mbashe to Cape Agulhas, and a large overlap zone between Cape Agulhas and Cape Point where waters of the two currents mix. The continental shelf is at its widest in this region, extending up to 240km offshore on the
Agulhas Bank. The shelf edge includes areas of extensive slumping. There are several areas of reef on the Agulhas Bank, including the
Alphard banks. This region has the highest number of South African endemics, and is a breeding area for many species. There are several important commercial fisheries including squid, horse mackerel, shark, and lobster. It was renamed to Agulhas ecoregion in the 2011 assessment.
East coast ; Natal region: : The Natal bioregion, from the
Mbashe River in the south-west to
Cape Vidal in the north, is characterised by a narrow continental shelf, with widths ranging from less than five km to a maximum of 50 km off the Tugela bank. This region has high riverine input and includes the
Thukela river, which is the largest river system in KwaZulu-Natal. The oceanographic driving force of this bioregion is the
Agulhas Current, with strong influence north of
Cape St Lucia and south of
Port Shepstone where the shelf is narrowest. In the Natal bight, south of Cape St Lucia, where the coastline is more distant from the shelf edge, there is a dynamically driven upwelling cell which is an important source of nutrients for the
Tugela Bank. A cyclonic eddy near
Durban sometimes causes a northward current to flow between
Aliwal Shoal and
Ballito. The submarine canyons in the Natal bioregion include the Tugela and Goodlad canyons in the north and several others between Port Shepstone and
Port St Johns. Reefs occur mainly in the southern and central areas within this bioregion and there is an important deep reef complex along most of this coastline. A commercial line fishery largely based on surf-launched vessels is important in this region, and the annual
sardine run occurs in the southern coastal waters. Limited reef habitat is represented by the major complexes at
Protea banks and Aliwal shoal. Biological communities of the rocky reefs in this region are different from the coral communities further north, as reef-building Indo-Pacific corals decline with the increased turbidity in the southern waters and are replaced by endemic
soft corals. There are major estuarine systems including Durban Bay, Richards Bay and the St Lucia system, and the Tugela mud banks are the only mud belt on the east coast, with unique biotic assemblages. They support prawn fisheries offshore and are nursery areas for elasmobranchs and bony fish. It was renamed to Natal ecoregion in the 2011 assessment. ; Delagoa region: : The
Delagoa bioregion from Inhaca to Cape Vidal has a narrow continental shelf, a shallow steep shelf break and a large number of submarine canyons. The warm Agulhas current is a dominant feature. It flows strongly southward along the shelf. There is little riverine inflow, so the water remains clear and the reefs are colonised by
scleractinian corals. The sediments are medium to fine grained sands and carbonate rich gravel and rubble. Nesting beaches of leatherback and loggerhead turtles can be found. The coastline includes occasional bays with rocky headlands, and long sandy beaches. There are no commercial fisheries in the South African part of this bioregion. It was renamed to Delagoa ecoregion in the 2011 assessment.
Offshore A further four offshore bioregions extending from the break of the continental shelf to the border of the EEZ were defined in the 2004 assessment. The offshore bioregions were defined based on the assumption that the marine biota of the deeper waters is more homogeneous than on the continental shelf, as the deeper water has more consistent temperature. This results in a smaller number of offshore bioregions. In most cases the boundary between bioregions was chosen as a straight line perpendicular to the coast, except for the break at Cape Point, which runs due south to the 30 m isobath then follows the 150 m isobath to 21°East. This approximates the line of the mixing zone between the Benguela and Agulhas currents, which separates their fish communities. This line divides the Agulhas bank into a western part which is considered part of the South-western Cape bioregion, and an eastern part which is in the Agulhas bioregion. The Cape Point break is extended south over the shelf break, down to the abyss and to the border of the EEZ. The region to the west of this break is the Atlantic Offshore bioregion, which is offshore of both the Namaqua and South-western Cape inshore regions. To the east of this break, the West Indian offshore bioregion comprises the upper and lower continental slope as far north-east as the Cape Vidal break. The abyssal region below this part of the slope is designated as the Indo-Pacific offshore bioregion. North of the Cape Vidal break, the slope is designated as the South-west Indian offshore bioregion. There is no abyssal region within the EEZ this far north. The three offshore bioregions east of Cape Agulhas were combined in the 2011 assessment. ==Habitat types==