Because the Broch of Mousa survives almost completely intact, archaeological investigation has focused less on large-scale excavation than on documenting the architecture and history of the standing structure. Built around during the later
Scottish Iron Age, the tower remained standing for centuries, and much of the archaeological material that might otherwise accumulate within a collapsed ruin was removed during later reuse and nineteenth-century clearing. The interior was first cleared of accumulated rubble in 1861, more than two thousand years after the broch was built. Excavators recovered large quantities of animal bones, particularly those of otters, which had likely inhabited the abandoned structure, along with fragments of pottery vessels, stone pot lids, and a slaty stone object described as resembling a triangular file. One of the most unusual discoveries was a carved wooden model of a Norwegian boat, about long and made from fir. Further clearing was carried out in 1919 by the
Office of Works, though relatively few additional artefacts were recovered. Some pottery sherds, including part of a
Black-burnished ware vessel, are now held in the
National Museum of Scotland. Although artefactual evidence from the site is limited, the architecture of the broch itself provides important archaeological evidence. Within the central court are a hearth, a stone floor tank, and a low stone bench running around the inner wall, indicating domestic activity during at least one phase of occupation. The tower walls also contain three ground-floor cells built into their thickness, entered through raised thresholds about above the floor and fitted with recesses that may have served for storage. Evidence indicates the broch was modified during the Iron Age. In its earliest phase the structure may have contained a timber
roundhouse supported by posts and resting on scarcement ledges built into the inner wall at heights of about . This was later replaced by a
wheelhouse-like arrangement with stone piers projecting into the central space. Modern archaeological work has focused mainly on recording and conservation rather than excavation. Major stabilisation was undertaken between 1967 and the 1980s, and in 2005 archaeologists used 3D laser scanning to document the structure and support conservation planning. ==Storm petrels==