Books • •
Theory and Evidence (Princeton, 1980) •
Examining Holistic Medicine (with D. Stalker), Prometheus, 1985 •
Foundations of Space-Time Theories (with J. Earman), University of Minnesota Press, 1986 •
Discovering Causal Structure (with R. Scheines, P. Spirtes and K.Kelly) Academic Press, 1987 • •
Causation, Prediction and Search (with P.Spirtes and R. Scheines), Springer, 1993, 2nd Edition MIT Press, 2001 •
Thinking Things Through, MIT Press, 1994 •
Android Epistemology (with K. Ford and P. Hayes) MIT/AAAI Press, 1996 • ''The Mind's Arrows: Bayes Nets and Graphical Causal Models in Psychology'', MIT Press, 2001 • •
Galileo in Pittsburgh Harvard University Press, 2010.
Journal articles • • "When is a Brain Like the Planet?",
Philosophy of Science, 2008. • (with David Danks) "Reasons as Causes in Bayesian Epistemology",
Journal of Philosophy, 2008. • "Markov Properties and Quantum Experiments", in W. Demopoulos and I. Pitowsky, eds.
Physical Theory and Its Interpretation: Essays in Honor of Jeffrey Bub, Springer 2006. • (with Chu, T. and David Danks) "Data Driven Methods for Granger Causality and Contemporaneous Causality with Non-Linear Corrections: Climate Teleconnection Mechanisms", 2004. • "Review of Phil Dowe and Paul Nordhoff: Cause and Chance: Causation in an Indeterministic World",
Mind, 2005. • (with Eberhardt, Frederick, and Richard Scheines). "N-1 Experiments Suffice to Determine the Causal Relations Among N Variables", 2004. • (with F. Eberhardt and R. Scheines), "Log2(N) Experiments are Sufficient, and in the Worst Case Necessary, for Identifying Causal Structure",
UAI Proceedings, 2005 • (with Handley, Daniel, Nicoleta Serban, David Peters, Robert O'Doherty, Melvin Field, Larry Wasserman, Peter Spirtes, and Richard Scheines), "Evidence of systematic expressed sequence tag IMAGE clone cross-hybridization on cDNA microarrays",
Genomics, Volume 83, Issue 6 (June, 2004), pages 1169–1175. • (with Handley, Daniel, Nicoleta Serban, and David G. Peters). "Concerns About Unreliable Data from Spotted cDNA Microarrays Due to Cross-Hybridization and Sequence Errors",
Statistical Applications in Genetics and Molecular Biology, Volume 3, Issue 1 (October 6, 2004), Article 25. • "Comment on D. Lerner", "The Illusion of Conscious Will",
Behavioral and Brain Sciences, in press. • "Review of Joseph E. Early, Sr. (Ed.): Chemical Explanation: Characteristics, Development, Autonomy",
Philosophy of Science, Volume 71, Number 3 (July, 2004), pages 415–418. • (with Spirtes, and Peter Glymour). "Causal Inference",
Encyclopedia of Social Science, in press • "We believe in freedom of the will so that we can learn",
Behavioral and Brain Sciences, Volume 27, Number 5 (2004), pages 661–662. • "The Automation of Discovery",
Daedelus, Volume Winter (2004), pages 69–77. • (with Serban, Nicoleta, Larry Wasserman, David Peters, Peter Spirtes, Robert O'Doherty, Dan Handley, and Richard Scheines). "Analysis of microarray data for treated fat cells", (2003). • (with Danks, David, and Peter Spirtes). "The Computational and Experimental Complexity of Gene Perturbations for Regulatory Network Search", (2003). • (with Silva, Ricardo, Richard Scheines, and Peter Spirtes). "Learning Measurement Models for Unobserved Variables", UAI '03,
Proceedings of the 19th Conference in Uncertainty in Artificial Intelligence, August 7–10, 2003, Acapulco, Mexico (2003), pages 543–550. • (with Danks, David and Peter Spirtes). "The Computational and Experimental Complexity of Gene Perturbations for Regulatory Network Search",
Proceedings of IJCAI-2003 Workshop on Learning Graphical Models for Computational Genomics, (2003), pages 22–31. • (with Frank Wimberly, Thomas Heiman, and Joseph Ramsey). "Experiments on the Accuracy of Algorithms for Inferring the Structure of Genetic Regulatory Networks from Microarray Expression Levels", International Joint Conference on Artificial Intelligence Workshop, 2003 • "A Semantics and Methodology for Ceteris Paribus Hypotheses",
Erkenntnis, Volume 57 (2002), pages 395–405. • "Review of James Woodward, Making Things Happen: A Theory of Causal Explanation",
British Journal for Philosophy of Science, Volume 55 (2004), pages 779–790. • (with Fienberg, Stephen, and Richard Scheines). "Expert statistical testimony and epidemiological evidence: the toxic effects of lead exposure on children",
Journal of Econometrics, Volume 113 (2003), pages 33–48. • "Learning, prediction and causal Bayes Nets",
Trends in Cognitive Sciences, Volume 7, Number 1 (2003), pages 43–47. • (with
Alison Gopnik, David M. Sobel,
Laura E. Schulz, Tamar Kushnir, and David Danks). "A theory of causal learning in children: Causal maps and Bayes nets",
Psychological Review, Volume 111, Number 1 (2004). • "Freud, Kepler, and the clinical evidence", in R. Wollheim and J. Hopkins, eds.
Philosophical Essays on Freud, Cambridge University Press 1982. • and many others dating back to 1970. ==References==