Goa youth Miranda retired from playing football in 2017 and went into coaching after being convinced to do so by his former coach,
Derrick Pereira. He joined his former playing club
Goa as an assistant to Pereira, club's director of youth development. He won the
2018–19 Goa Professional League with the club. In charge of last three league matches and two playoff matches, he guided the club to league title and Goa became the first Indian club to qualify for
AFC Champions League group stage. He continued at the club as an assistant coach till the end of
2021–22 season.
Odisha (assistant and interim) On 28 June 2022, Miranda was appointed as an assistant coach at Indian Super League club
Odisha. After head coach
Josep Gombau parted ways with club at the end of the
2022–23 season, he was appointed as the interim head coach on 16 March 2023. He led Odisha to their first ever major title with a 2–1 win over
Bengaluru in the
2023 Indian Super Cup final and became the first Indian coach to do so.
Mohun Bagan SG (assistant) On 1 August 2023, Miranda was appointed as an assistant coach to
Juan Ferrando at
Mohun Bagan SG. He later took over as
caretaker manager in the
2024 Indian Super Cup after the sacking of Ferrando.
India U23 On 3 August 2023, Miranda was appointed as the head coach of
India national under-23 team ahead of the
2024 AFC U-23 Asian Cup qualification.
Mumbai City FC (assistant) On 1st July 2024 It was announced that Clifford Miranda would be Mumbai City FC's new assistant coach. == Career statistics ==