B and T lymphocytes are tested for self reactivity in the
primary lymphoid organs, before entering into the periphery.
B Lymphocytes Regulation of auto-reactive B lymphocytes can occur at many different stages during B cell development. The first line of defense occurs within the bone marrow, before the auto-reactive cell can reach circulation.
Thymic cortex T lymphocytes first undergo positive selection within the thymic cortex. Here T lymphocytes are tested to see if they can recognize self
major histocompatibility complex class I or II (MHC I/II).
Thymic medulla T cells also have the opportunity to undergo clonal deletion within the thymic medulla. Here the T lymphocytes undergo negative selection. At this point they encounter MHC I/II complexes presenting self antigens. If the T lymphocyte interacts with high affinity to the complex presenting self antigen, then that lymphocyte will undergo apoptosis or
Treg differentiation. Similarly to B lymphocyte regulation, T lymphocytes have the potential to leave the thymus and still be autoreactive. However, the immune system has evolved to combat this though peripheral tolerance. Mechanisms of peripheral tolerance against auto-reactive T lymphocytes include clonal arrest,
clonal anergy, and clonal editing after. == Complete vs. incomplete clonal deletion ==