As with all cabinet-level bodies under the Executive Yuan, the Council of Indigenous Peoples is headed by a minister who is recommended by the
Premier and appointed by the
President. The first chairman of the Council of Aboriginal Affairs was
Hua Chia-chi. He was succeeded in 2000 by
Yohani Isqaqavut, a long-time indigenous rights activist, chief of general affairs at the Yushan College of Theology, and Presbyterian missionary. Yohani stepped down in 2002. His successor,
Chen Chien-nien, had been Taitung County commissioner from 1993 to 2001, a position in which he became known for his dedication to improving the lives of indigenous peoples. On 4 February 2005, Chen was indicted for electoral fraud. He was accused of buying votes for his daughter,
Chen Ying, in the legislative election held
three months prior. Chen denied the accusations, but he nevertheless resigned from his position as chairman. He was replaced by
Walis Pelin. In 2007,
Icyang Parod became chairman, and he was succeeded by
Chang Jen-hsiang the next year. Chang was criticized by both indigenous people and legislators of all ethnicities. Indigenous protesters outside the Council building demanded Chang resign, saying that she had disregarded the land and hunting rights of indigenous peoples. Protesters claimed Chang allowed the
Atomic Energy Council to dump nuclear waste near indigenous villages, and that the government would not let the Puyuma people participate in its traditional annual hunt without permission from the
Forestry Bureau.
Kao Chin Su-mei, an
Atayal legislator, criticized Chang at the same time. Chang was later criticized by several other lawmakers, who questioned her effectiveness in her position, as well as her commitment to securing autonomy for indigenous peoples.
Sun Ta-chuan, an academic, became the chairman in 2009. He was succeeded in 2013 by
Lin Chiang-yi, formerly the deputy minister of the council. == Tribal recognition ==