Huttenhower gained his BS from the
Rose-Hulman Institute of Technology in 2000, where he majored in computer science, chemistry and mathematics. He then spent two years as a software developer for
Microsoft, working on the Microsoft Natural Language Development Platform. Huttenhower gained his MS in
computational linguistics from
Carnegie Mellon University in 2003, where he studied with Dannie Durand and
Eric Nyberg. In 2003, Huttenhower moved to
Princeton University where he was awarded a
PhD in 2008 for research in
genomics supervised by
Olga Troyanskaya. His PhD thesis was titled
Analysis of large genomic data collections. ==Research==