After joining the Radio Astronomy Group of TIFR on 16 August 1977, Saikia continued to be a part of the group which later became the
National Centre for Radio Astrophysics, until his superannuation on 31 January 2018. During this period he also worked at other institutions besides TIFR and
Jodrell Bank Observatory. Saikia was a Visiting Professor and International visiting scholar at
Queen's University at Kingston, Canada, during 2000–2001, working with Judith Irwin on nearby galaxies. He was a distinguished visitor at the
Australia Telescope National Facility, CSIRO Astronomy and Space Science division, Sydney in 2009, and visiting professor at the
International Centre for Radio Astronomy Research, University of Western Australia during 2009–2010. Saikia was a visiting scientist at the
National Radio Astronomy Observatory in Socorro, New Mexico, USA in 2011, as part of the Resident Shared Risk Observing (RSRO) program, making the initial observations and testing data reduction procedures with Judith Irwin for the CHANG-ES (Continuum Halos in Nearby Galaxies—an EVLA Survey) project with the then-newly Expanded Very Large Array and now known as the
Karl G. Jansky Very Large Array. In addition to his early interests and contributions to jets in active galactic nuclei (AGN) and unification schemes, his research interests cover a wide spectrum. These include the evolution of radio galaxies from their sub-galactic dimensions to the largest single objects in the universe spanning about 15 million light years, episodic or recurrent jet active activity in AGN, radio continuum surveys, neutral atomic hydrogen in galaxies, clusters of galaxies, high energy emission from radio-loud AGN, starburst galaxies, outflows in nearby galaxies, star formation, and AGN activity in nearby galaxies. He has been a part of major international collaborations such as the CHANG-ES project led by Judith Irwin, LeMMINGs (Legacy e-MERLIN Multi-band Imaging of Nearby Galaxy Sample) survey led primarily by Rob Beswick, Ranieri Baldi, and Bil Dullo, and SAGAN (Search and Analysis of GRGs with Associated Nuclei), a systematic study of giant radio galaxies (GRGs) led by Pratik Dabhade. In 2012, Saikia took the position as the first vice-chancellor of Cotton University (then known as Cotton College State University), Assam, India, which was established in 2012 on the foundations of the historic Cotton College established in 1901. He continued as the vice-chancellor util 27 July 2017, seeing through the amalgamation of the college and the university into one unitary structure on 1 June 2017. After his superannuation from TIFR on 31 January 2018, Saikia joined IUCAA in February 2018 and headed the Astronomy Centre for Educators (ACE) at IUCAA, which consists of the Teaching Learning Centre and the National Resource Centre. At IUCAA he devoted his time to carrying out a wide range of programmes and creating resources for improving pedagogic processes in astronomy and astrophysics in institutions of higher education in India. In recent years, Saikia's research interests have covered aspects of higher education in India. During 2012–2017, while setting up Cotton University, Saikia had been looking into some of the problems confronting higher education in India, and also underlining the importance of maintaining institutional-level data. Such data besides being important for research is also crucial for formulating policies and monitoring their outcomes. Some of the topics explored include areas of silence in debates on higher education outlined in an occasional paper published by the Nehru Memorial Museum and Library; issues affecting research outcomes in our universities; and results of an experiment in Cotton University to engage with questions, such as the fairness and effectiveness of examination and evaluation systems, and the correlation of a student's academic performance with prior education and social background. Saikia advocates institutional research in higher educational institutions in India. == Editorial work ==