One of the best understood examples of pattern formation is the patterning along the future head to tail (antero-posterior) axis of the fruit fly
Drosophila melanogaster. There are three fundamental types of genes that give way to the developmental structure of the fly: maternal effect genes, segmentation genes, and homeotic genes. The development of
Drosophila is particularly well studied, and it is representative of a major class of animals, the insects or
insecta. Other multicellular organisms sometimes use similar mechanisms for axis formation, although the relative importance of signal transfer between the earliest cells of many developing organisms is greater than in the example described here.
Maternal effect genes The building-blocks of anterior-posterior axis patterning in
Drosophila are laid out during egg formation (
oogenesis), well before the egg is fertilized and deposited. The maternal effect genes are responsible for the polarity of the egg and of the embryo. The developing egg (
oocyte) is polarized by differentially localized
mRNA molecules. The genes that code for these mRNAs, called
maternal effect genes, encode for proteins that get translated upon fertilization to establish concentration gradients that span the egg.
Bicoid and
Hunchback are the maternal effect genes that are most important for patterning of anterior parts (head and thorax) of the
Drosophila embryo.
Nanos and
Caudal are maternal effect genes that are important in the formation of more posterior abdominal segments of the
Drosophila embryo. In embryos from
bicoid mutant mothers, the head and thoracic structures are converted to the abdomen making the embryo with posterior structures on both ends, a lethal phenotype.
Cytoskeletal elements such as
microtubules are polarized within the oocyte and can be used to allow the localization of mRNA molecules to specific parts of the cell. Maternally synthesized
bicoid mRNAs attach to microtubules and are concentrated at the anterior ends of forming
Drosophila eggs. In unfertilized eggs, transcripts are still strictly localized at the tip, but immediately after fertilization, a small mRNA gradient is formed in the anterior 20% of the eggs. Another report documents a mRNA gradient up to 40%.
nanos mRNA also attaches to a
Drosophila egg's cytoskeleton but is concentrated at the posterior end of the egg.
hunchback and
caudal mRNAs lack special location control systems and are fairly evenly spread throughout the entire interior of the egg cells. It has been shown that the dsRNA-binding protein STAUFEN (
STAU1) is responsible for guiding bicoid, nanos and other proteins, which play a role in forming the anterior-posterior axis, to the correct regions of the embryo to build gradients. When the mRNAs from the maternal effect genes are
translated into proteins, a Bicoid protein gradient forms at the anterior end of the egg. Nanos protein forms a gradient at the posterior end. The Bicoid protein blocks translation of
caudal mRNA so Caudal protein is of lower concentration at the anterior part of the embryo and at higher concentration at the posterior part of the embryo. This is of opposite direction of the Bicoid protein. The caudal protein then activates later to turn genes on to form the posterior structures during the segmentation phase. Nanos protein creates a posterior-to-anterior slope and is a
morphogen that helps in abdomen formation. Nanos protein, in complex with Pumilio protein, binds to the
hunchback mRNA and blocks its translation in the posterior end of
Drosophila embryos. The Bicoid, Hunchback, and Caudal proteins are
transcription factors. The Bicoid protein is a morphogen as well. The Nanos protein is a translational repressor protein. Bicoid has a DNA-binding
homeodomain that binds both DNA and the
nanos mRNA. Bicoid binds a specific RNA sequence in the
3′ untranslated region, called the
Bicoid 3′-UTR regulatory element, of
caudal mRNA and blocks translation. Hunchback protein levels in the early embryo are significantly augmented by new
hunchback gene transcription and translation of the resulting
zygotically produced mRNA. During early
Drosophila embryogenesis, there are nuclear divisions without cell division. The many nuclei that are produced distribute themselves around the periphery of the cell
cytoplasm. Gene expression in these nuclei is regulated by the Bicoid, Hunchback, and Caudal proteins. For example, Bicoid acts as a transcriptional activator of
hunchback gene transcription. In order for development to continue, Hunchback is needed in an area that is declining in amount from anterior to posterior. This is created by the Nanos protein whose existence is at a declining slope from posterior to anterior ends. Bicoid gradient.png|bicoid mRNA + protein gradient Nanos gradient.png|Nanos protein gradient -->
Gap genes The other important function of the gradients of Bicoid, Hunchback, and Caudal proteins is in the transcriptional regulation of other zygotically expressed proteins. Many of these are the protein products derived from members of the "gap" family of developmental control genes.
giant,
huckebein,
hunchback,
knirps,
Krüppel and
tailless are all
gap genes. Their expression patterns in the early embryo are determined by the maternal effect gene products and shown in the diagrams on the right side of this page. The gap genes are part of a larger family called the
segmentation genes. These genes establish the segmented body plan of the embryo along the anterior-posterior axis. The segmentation genes specify 14
parasegments that are closely related to the final anatomical segments. The gap genes are the first layer of a hierarchical cascade of the segmentation control genes.
Additional segmentation genes Two additional classes of segmentation genes are expressed after the gap gene products. The
pair-rule genes are expressed in striped patterns of seven bands perpendicular to the anterior-posterior axis. These patterns of expression are established within the syncytial blastoderm. After these initial patterning events, cell membranes form around the nuclei of the syncytial blastoderm converting it to a cellular blastoderm. The expression patterns of the final class of segmentation genes, the
segment polarity genes, are then fine-tuned by interactions between the cells of adjacent parasegments with genes such as
engrailed. The
Engrailed protein is a transcription factor that is expressed in one row of cells at the edge of each parasegment. This expression pattern is initiated by the pair-rule genes (like
even-skipped) that code for transcription factors that regulate the
engrailed gene's transcription in the syncytial blastoderm. Cells that make Engrailed can make the cell-to-cell signaling protein
Hedgehog. The motion of Hedgehog is limited by its lipid modification, and so Hedgehog activates a thin stripe of cells anterior to the Engrailed-expressing cells. Only cells to one side of the Engrailed-expressing cells are competent to respond to Hedgehog because they express the receptor protein
Patched. Cells with activated Patched receptor make the
Wingless protein. Wingless is a secreted protein that acts on the adjacent rows of cells by activating its cell surface receptor,
Frizzled. Wingless acts on Engrailed-expressing cells to stabilize Engrailed expression after the cellular blastoderm forms. The
Naked cuticle protein is induced by Wingless to limit the number of rows of cells that express Engrailed. The short-range, reciprocal signaling by Hedgehog and Wingless, held in check by the Patched and Naked proteins, stabilizes the boundary between each segment. The Wingless protein is called "wingless" because of the
phenotype of some
wingless mutants. Wingless and Hedgehog also function in multiple tissues later in embryogenesis and also during
metamorphosis. The transcription factors that are coded for by segmentation genes regulate yet another family of developmental control genes, the
homeotic selector genes. These genes exist in two ordered groups on
Drosophila chromosome 3. The order of the genes on the chromosome reflects the order that they are expressed along the anterior-posterior axis of the developing embryo. The Antennapedia group of homeotic selector genes includes
labial,
antennapedia,
sex combs reduced,
deformed, and
proboscipedia. Labial and Deformed proteins are expressed in head segments where they activate the genes that define head features. Sex-combs-reduced and Antennapedia specify the properties of thoracic segments. The bithorax group of homeotic selector genes control the specializations of the third thoracic segment and the abdominal segments. Mutations in some homeotic genes can often be lethal and the cycle of life will end at embryogenesis. In 1995, the
Nobel Prize for Physiology or Medicine was awarded for studies concerning the genetic control of early embryonic development to
Christiane Nüsslein-Volhard,
Edward B. Lewis and
Eric Wieschaus. Their research on genetic screening for embryo patterning mutants revealed the role played in early embryologic development by
homeobox genes like
bicoid. An example of a homeotic mutation is the so-called Antennapedia mutation. In
Drosophila, antennae and legs are created by the same basic "program", they only differ in a single transcription factor. If this transcription factor is damaged, the fly grows legs on its head instead of antennae. See images of this "antennapedia" mutant and others, at FlyBase. Another example is in the bithorax complex. If nonlethal mutations occur in this complex, it can cause the fly to have two sets of wings, instead of one pair of wings and one pair of halteres, which aid in balance in flight. == Dorsal-ventral axis ==