Early career 's under-17 team in 2011 Shortly after retiring, Meza became his father's assistant coach at
Pachuca, being a part of the staff when the club won two
CONCACAF Champions' Cups and the
2007 Clausura. In 2009, while scouting for players in Ghana, due to heath scares about influenza, he was arrested for three days before being deported back to Mexico through Nigeria, despite having a permit to transit in the country. In October 2009, when
Paul Le Guen became manager of the
Cameroon national team, Meza was invited to his coaching staff; he previously had spent a brief period with the national side back in 2008, when
Thomas N'kono was their manager. He only spent one month with Le Guen before rejoining his father's staff at former club Cruz Azul in December 2009. An assistant of his father and coach of the under-17 team, Meza led the under 17s to the final of the Mexican and South American clubs invitational Independence Cup, but lost the final to
Boca Juniors. He left the club in 2013, and spent a period between January and May 2014 in
Barcelona to undertake courses. In 2012, with the authorization of General Secretary: Horace Reid, Enrique consulted on technical analysis and report for the
Jamaica Football Federation during the
2014 FIFA World Cup qualification matches for
CONCACAF region.
Santos de Guápiles On 16 May 2014, Costa Rican side
Santos de Guápiles announced Meza as the club's technical director and head coach. After finishing ninth, he left the club on a mutual agreement in December.
Cartaginés in 2015 On 14 January 2015, Meza was appointed manager of
Cartaginés, still in Costa Rica. He was sacked on 12 March, after only three wins in 11 matches.
Querétaro In 2016, Meza was the head coach and technical director of
Querétaro's under-20 team. In June of that year, he was highly linked to become the manager of Guatemalan side
Suchitepéquez, but the move never materialized.
Melgar In January 2017, Meza moved to Peru and took over
FBC Melgar's youth team. On 5 October of that year, he was named manager of the first team, and took the club to the
2018 Copa Libertadores. Meza was maintained as manager for the 2018 campaign on 18 December 2017, but resigned on 29 April 2018.
Celaya On 5 July 2018, Celaya presented Meza as head coach and technical director for the club. He was dismissed from the club on 6 December, with the side in the last position after 14 matches.
Veracruz In June 2019, Meza returned to his home country to join his father's staff at
Veracruz, as an assistant coach. In September, as his father was sacked, he also left the club.
Toluca On 21 October 2019, Meza returned to his first senior club Toluca, being named new manager of the
Fuerzas Básicas, the club's youth teams. The following 11 June, he was sacked.
Carlos A. Mannucci On 7 November 2021, Peruvian side
Carlos A. Mannucci announced that Meza will serve as their head coach for the 2022 season. He left on a mutual agreement the following 7 March, as the club failed to win any of their first four matches into the new season. ==Personal life==