Fissurina alligatorensis is a species of corticolous (bark-dwelling) crustose lichen in the family Graphidaceae. Characteristics of the lichen include its lack of secondary compounds and an ecorticate thallus. Its habitat is centred around the Alligator River National Wildlife Refuge in North Carolina, USA, and it has a preference for soft-barked trees. While it can easily be confused with other Fissurina species, there are specific characters that distinguish it, such as its violet ascospores and its lirellate fruiting bodies.