The draw was made by
Estonian Football Association on 27 May 2017. • League level of the club in the brackets. • Rahvaliiga RL (people's league) is a league organized by
Estonian Football Association, but not part of the
main league system.
Byes These teams were not drawn and secured a place in the second round without playing: •
Meistriliiga (Level 1):
JK Sillamäe Kalev,
Tartu JK Tammeka,
Pärnu JK Vaprus,
Viljandi JK Tulevik •
Esiliiga (2):
FC Santos Tartu,
JK Tallinna Kalev,
FC Kuressaare,
FC Elva •
Esiliiga B (3):
Viimsi JK •
II Liiga (4): Tallinna FC Levadia III,
Tallinna JK Legion,
Maardu United, Kohtla-Järve JK Järve II,
Narva United FC •
III Liiga (5):
Põhja-Tallinna JK Volta, JK Tallinna Kalev III, Rumori Calcio Tallinn,
Suure-Jaani United, Koeru JK,
Ambla Vallameeskond,
JK Loo,
Pärnu JK Poseidon, Tallinna FC Castovanni Eagles, FC Zenit Tallinn,
Läänemaa JK,
FC Lelle •
IV Liiga (6): Tallinna Depoo, Kohila Püsivus,
FC Warrior Valga • Rahvaliiga (RL): JK Rapla Lokomotiiv ==Second round (1/32)==