Purefoods and Talk 'N Text After retiring as a player, Lim was named an assistant of
Eric Altamirano in
Purefoods in 1997. Two years later, Altamirano moved to
Talk 'N Text; Lim declined to be named interim coach as he wanted his first coaching stint to be a permanent one; he joined Altamirano in Talk 'N Text instead. With a change in management, the entire coaching staff was fired, but new owner
Manuel V. Pangilinan later hired him as team manager of the team.
San Beda Lim then coached the
San Beda Red Lions in the NCAA, where he won four titles with the school in
2007,
2008,
2010, and
2011. In 2010, his team posted an immaculate record of 18-0 by sweeping all its opponents from the eliminations to the finals. In 2012, he resigned, just before he was set to serve a two-year ban from the NCAA for getting involved in a brawl with then
San Sebastian College-Recoletos volleyball head coach
Roger Gorayeb.
Indonesia In 2013, he briefly left the Philippines to coach
Stadium Jakarta in Indonesia's
National Basketball League.
Ginebra In January 2015, he joined Ginebra as an assistant coach to
Ato Agustin. After the team suffered another early exit in the
2015 PBA Commissioner's Cup, he was appointed head coach of the Gin Kings, replacing Agustin. In June 2015, Lim was fined and suspended for striking out at
Calvin Abueva. Abueva clashed with
Orlando Johnson after a heated play, before
LA Tenorio shoved Abueva hard who fell close to Lim, who seemed to lash out. The
Philippine Basketball Association suspended Lim for a game, also well as giving him a fine along with Abueva, Johnson, and Tenorio for their respective roles in the incident.
Perpetual In late 2017, Lim returned to the NCAA after being named as basketball consultant of the
Perpetual Altas; this was reportedly after the league lifted its suspension against Lim. A month later, he was appointed head coach of the Altas. With the onset of the
COVID-19 pandemic,
University of Perpetual Help System DALTA shut down its athletic program, suspending contracts of its coaches, including Lim's. He subsequently resigned after leading the Altas to the semifinals in his first year, only to finish with a losing record in the next season.
NLEX In 2022, the
NLEX Road Warriors appointed Lim as their head coach, after then coach
Yeng Guiao declined the management's offer of him taking a corporate role instead of coaching. Lim is set to serve his PBA suspension from his last stint with Ginebra in 2015 on the Abueva incident on his supposed first game on charge at NLEX. == Coaching style ==