Stark is the author of over 250 publications and has worked alongside several
Nobel Laureates. Most of his research is centered on the use of enzymes, the modification, cleavage, and analysis of proteins, and the manipulation of biochemical pathways. In graduate school at Columbia, Stark investigated
ascorbic acid oxidase, which was concentrated in the skin of yellow crook-necked squash, and focused specifically on the role of its
sulfhydryl groups. Previous work had been done on inhibition of ascorbic acid oxidase, and observations led researchers to postulate that the sulfhydryl group may only be exposed during enzymatic activity, and thus crucial for oxidizing ascorbic acid. Through inhibition studies with p-chloro-mercuribenzoic acid, Stark came to the conclusion that the functionality of this particular enzyme is not dependent upon its sulfhydryl functional groups. The details and results of these studies were explained in Stark's PhD dissertation. During his fellowship at Rockefeller, he worked with Nobel Laureates
Stanford Moore and
William Howard Stein. He did significant work with
cyanate, which can be produced from urea. His experiments set out to explain why enzymatic activity, namely of
ribonuclease, decreased when in solution with urea. Using chromatography, Stark was able to detect a change in the amino acid sequence of ribonuclease, specifically the loss of lysine residues, in the presence of cyanate, and so he postulated that the cyanate facilitated the carbamylation of amino groups in the urea solution. He then conducted several experiments to evaluate his hypothesis using various proteins and urea. Upon further chromatography analysis and acid hydrolysis of the modified proteins, Stark came to the conclusion that cyanate indeed reacts with amino and sulfhydryl groups, with the latter being a more rapid reaction. Stark and his colleague
Derek Smyth then used these findings to develop a new method of determining the N-terminal residues to assist with sequencing peptide chains. Essentially, cyanate reacts with the amino groups and exposes them in order for them to react with acid and form
hydantoins, which can be broken down into their corresponding amino acids. This process is similar to the
dinitrofluorobenzene method for sequencing proteins. Following his Rockefeller fellowship, Stark was recruited by
Arthur Kornberg, another Nobel Laureate, to conduct research at Stanford. His research was now focused on
aspartate transcarbamylase, which catalyzes the transfer of a carbamyl group from phosphate to aspartate, and he and his colleague Kim Collins investigated a certain intermediate of this reaction, namely N-phosphonacetyl-l-aspartate, better known as PALA. They postulated that this particular intermediate could be a feasible inhibitor, and after synthesizing it, found that it indeed inhibited ATCase. This is where Stark's research on mammalian cells began. Aspartate transcarbamylase is one of the first three enzymes necessary for de novo synthesis of pyrimidine nucleotides, and after Stark was able to isolate this protein complex in hamster cells, he then treated them with PALA and found this pathway inhibited. Furthermore, with another colleague Randall Johnson, Stark began testing the use of PALA as a treatment for tumors in mice cells, with significant rudimentary results. PALA was able to successfully inhibit growth of transplantable tumors, but was less successful with solid tumors. It was later found that this ability did not translate well to human cells and has minimal therapeutic uses on its own. Another major advancement made by Stark and his colleagues at Stanford was the development of the
Northern blot and
Western blot techniques, which allow researchers to more efficiently detect isolated mRNA. To do this, they first developed a method to couple DNA with diazotized cellulose, which was reactive with both DNA and RNA. They were then able to use gel electrophoresis and cellulose chromatography paper to isolate mRNA molecules, and then probe them with complementary DNA strands. In contrast with the previously used
Southern blot, this method allowed for the analysis of RNA instead of DNA. A similar method was used for identification of proteins, leading to the method referred to as the Western blot., variations of which were also reported by two other groups, working independently at about the same time: Harry Towbin and coworkers in Basel, Switzerland, and W. Neil Burnett in Robert Nowinski's lab at Fred Hutchinson Cancer Research Center in Seattle, who also coined the name "Western" blotting. The Towbin group used secondary antibodies for detection, which is now the predominant method in Western blotting. Some of Stark's most important advancements have been within the realm of
interferon-dependent signalling. These studies began at Stanford and continued during his time in London, where his lab focused on these pathways, along with mechanisms of gene amplification, and this research has continued throughout the rest of his career. Stark's lab group, in collaboration with
Ian M. Kerr’s group at the Imperial Cancer Research Fund, was attempting to identify the key components of IFN-dependent signaling. Interferons induce antiviral activities, inhibit cell growth, control apoptosis, and are implicated in promoting immune responses. Concurrently with
James E. Darnell’s lab group, Stark's group was able to uncover a new direct signal transduction pathway through their study of
interferon alpha and
interferon gamma. This particular pathway, better known as the
JAK-STAT signaling pathway, is characterized by the interaction of interferon receptors at the cell's surface with Janus kinases (JAKs), which are then able to phosphorylate substrate proteins called
signal transducers and activators of transcription (STATs). These STAT proteins then migrate to the nucleus and then initiate transcription. These proteins are also involved in the resistance of cancer cells to DNA damaging therapies, and this is just one of the many topics that Stark has focused on during his research career at the
Case Comprehensive Cancer Center. == Awards and legacy ==