Schmidt arrived in Israel and joined the soon-to-be-dedicated Weizmann Institute in late 1948. He had been invited by
Ernst Bergmann, then the Institute's scientific director, to set up a research group in chemical crystallography. He later gradually broadened his activities to include solid-state chemistry and crystal spectroscopy. At the Weizmann Institute, Schmidt combined scientific research with holding senior administrative positions. From 1959 to 1961, he served as chairman of the Institute's Scientific Committee and its administrative director. He was appointed head of the Department of Chemistry in 1967 and, with the establishment of the chemistry faculty in 1970, became its first dean. In 1969 he served as the Scientific Director of the Weizmann Institute. In 1970 this position was absorbed into the President position, and Schmidt became a Dean of the Chemistry Faculty. In the late 1950s, while serving as Weizmann's Administrative Director, Schmidt was among the pioneers of the German-Israeli scientific collaboration, which began with ties between the Weizmann Institute and the
Max Planck Society. This initiative led to the creation of the in 1964 and paved the way for the establishment of formal relations between Israel and Germany in 1965. Schmidt devoted considerable time to applied science. From 1960 to 1964, he chaired the Board of Yeda Research & Development Co., the Weizmann Institute's technology transfer arm. Outside the Weizmann Institute, Schmidt was actively involved in Israel's scientific and technological development. From 1960 to 1968, he served on the board of directors of the
Dead Sea Works. In 1967, he became a member of the executive committee of the new Center for Industrial Research in
Haifa. In addition, from 1967 to 1969, he chaired two committees established by Israel's National Council for Research and Development – on technical applications of photochemistry and on bromine chemistry. He founded the Israel Crystallography Society and was its first President (1958-1960), negotiating its adherence to the
International Union of Crystallography. In 1963, he received the Weizmann Prize in the Exact Sciences from
Tel Aviv municipality for his research on the structure and chemical behavior of crystals. The Weizmann Institute has established the annual Gerhard M. J. Schmidt Memorial Lecture held in the Schmidt Lecture Hall, and the Gerhard M.J. Schmidt Minerva Center on
Supramolecular Architectures, which supports collaboration between Weizmann faculty and German scientists. ==Scientific research==