Black rat

Mus rattus was the scientific name proposed by Carl Linnaeus in 1758 for the black rat. ==Description==

(Rattus norvegicus)|alt=Diagram showing differences between the physical features of black and brown rats |alt=Black rat skeleton A typical adult black rat is long, not including a tail, and weighs , depending on the subspecies. Despite its name, the black rat exhibits several colour forms. It is usually black to light brown in colour with a lighter underside. In England during the 1920s, several variations were bred and shown alongside domesticated brown rats. This included an unusual green-tinted variety. The species has three colour variants: • Roof rat – between greyish black merging into slate grey to all-black • Alexandrine rat – agouti and grey through slate grey • Fruit rat – agouti and pure white. ==Origin==

The black rat was present in prehistoric Europe and in the Levant during postglacial periods. The black rat in the Mediterranean region differs genetically from its South Asian ancestor by having 38 instead of 42 chromosomes. Its closest relative is the Asian house rat (R. tanezumi) from Southeast Asia. The two diverged about 120,000 years ago in southwestern Asia. It is unclear how the rat made its way to Europe due to insufficient data, although a land route seems more likely based on the distribution of European haplogroup "A". The black rat spread throughout Europe with the Roman conquest, but declined around the 6th century, possibly due to collapse of the Roman grain trade, climate cooling, or the Justinianic Plague. R. rattus specimens have been found dating back to 800 BCE in Britain, although it is unclear how they migrated there. A genetically different rat population of haplogroup A replaced the Roman population in the medieval times in Europe. It is a resilient vector for many diseases because of its ability to hold so many infectious bacteria in its blood. It was formerly thought to have played a primary role in spreading bacteria contained in fleas on its body, such as the plague bacterium (Yersinia pestis) which is responsible for the Plague of Justinian and the Black Death. However, recent studies have called this theory into question and instead posit humans themselves as the vector, as the movements of the epidemics and the black rat populations do not show historical or geographical correspondence. A study published in 2015 indicates that other Asiatic rodents served as plague reservoirs, from which infections spread as far west as Europe via trade routes, both overland and maritime. Although the black rat was certainly a plague vector in European ports, the spread of the plague beyond areas colonized by rats suggests that the plague was also circulated by humans after reaching Europe. ==Distribution and habitat==

The black rat originated in India and Southeast Asia, and spread to the Near East and Egypt, and then throughout the Roman Empire, reaching Great Britain as early as the 1st century AD. Europeans subsequently spread it throughout the world. The black rat is again largely confined to warmer areas, having been supplanted by the brown rat (Rattus norvegicus) in cooler regions and urban areas. In addition to the brown rat being larger and more aggressive, the change from wooden structures and thatched roofs to bricked and tiled buildings favoured the burrowing brown rats over the arboreal black rats. In addition, brown rats eat a wider variety of foods, and are more resistant to weather extremes. Black rat populations can increase exponentially under certain circumstances, perhaps having to do with the timing of the fruiting of the bamboo plant, and cause devastation to the plantings of subsistence farmers; this phenomenon is known as mautam in parts of India. Black rats are thought to have arrived in Australia with the First Fleet, and subsequently spread to many coastal regions in the country. Black rats adapt to a wide range of habitats. In urban areas they are found around warehouses, residential buildings, and other human settlements. They are also found in agricultural areas, such as in barns and crop fields. In urban areas, they prefer to live in dry upper levels of buildings, so they are commonly found in wall cavities and false ceilings. In the wild, black rats live in cliffs, rocks, the ground, and trees. They are great climbers and prefer to live in palms and trees, such as pine trees. Their nests are typically spherical and made of shredded material, including sticks, leaves, other vegetation and cloth. In the absence of palms or trees, they can burrow into the ground. Black rats are also found around fences, ponds, riverbanks, streams, and reservoirs. ==Behaviour and ecology==

The black rat has a wide home range, typically foraging in a home range of . Its home range is highly dependent on its gender, as male rats range can be up to thrice that of female rats. Its home range also differs depending on the type of forest; home ranges in the southern beech forests of the South Island, New Zealand appear to be much larger than the non-beech forests of the North Island. Due to the limited number of rats that are studied in home range studies, the estimated sizes of rat home ranges in different rat demographic groups are inconclusive. Social behaviour The black rat is generally territorial, although the territory is typically a small subset of the full range. Female black rats have no hierarchy, and are generally more aggressive, while male rats tend to flee when attacked unless females are present. Like its relative R. norvegicus, R. rattus often huddle in groups. Rats are at their most aggressive when they have just reached adulthood, but do not tend to lose status as they grow older, and younger rats are often singled out as enemies by older females. Older females and male rats of high status rarely fight among themselves, although they are occasionally fought by younger rats. Although rattus and norvegicus can coexist in the same habitat, R. rattus will typically attack any norvegicus that enter an established colony. , the "Temple of Rats" Rats may mark their territory by rubbing themselves against trees, and typically prefer to mark areas that are the least secure from other rats. Scents produced in their preputial gland are also used to identify rats to the opposite sex during mating. Mating and reproduction Black rats typically breed year-round, and females can produce up to 5 litters in one season. In populations where most rats are closely related, rats may leave the colony as they reach sexual maturity in order to avoid inbreeding. During copulation, male rats seldom mount females for more than one second, but can continue to mount a female repeatedly for up to ten minutes. Female rats' gestation period can range from 12 to 29 days. Black rats typically live for about one year in the wild and up to four years in captivity. The black rat displays flexibility in its foraging behaviour. It is a predatory species and adapts to different micro-habitats. It often meets and forages together in close proximity within and between sexes. When offered a wide diversity of foods, it eats only a small sample of each. This allows it to monitor the quality of foods that are present year round, such as leaves, as well as seasonal foods, such as herbs and insects. This method of operating on a set of foraging standards ultimately determines the final composition of its meals. Also, by sampling the available food in an area, it maintains a dynamic food supply, balances its nutrient intake, and avoids intoxication by secondary compounds. Research shows that, in New South Wales, the black rat prefers to inhabit lower leaf litter of forest habitat. There is also an apparent correlation between the canopy height and logs and the presence of black rats. This correlation may be a result of the distribution of the abundance of prey as well as available refuges for rats to avoid predators. As found in North Head, New South Wales, there is positive correlation between rat abundance, leaf litter cover, canopy height, and litter depth. All other habitat variables showed little to no correlation. Unlike brown rats, black rats have a tendency to nest inside trees or the upper floors of a house,. Diseases Black rats (or their ectoparasites) can carry a number of pathogens, of which bubonic plague (via the Oriental rat flea), typhus, Weil's disease, toxoplasmosis and trichinosis are the best known. It has been hypothesized that the displacement of black rats by brown rats led to the decline of the Black Death. This theory has, however, been deprecated, as the dates of these displacements do not match the increases and decreases in plague outbreaks. Plague Black rats are the main transmitter of bubonic plague, or Yersinia pestis, which they spread indirectly through the fleas they carry. Although other animals such as coyotes, bobcats, and rabbits can serve as plague reservoirs, the flea species Xenopsylla cheopis commonly carried by R. rattus is one of the most effective spreaders. However, archaeological evidence indicates that R. rattus might not have been present during the Black Death in England, suggesting that the plague was spread by another species. Although R. rattus populations often die out after a plague, causing transmission to cease, rats that survive the plague can serve as reservoirs for the disease, as well as transmitting it from wild reservoir populations to human settlements. Rats in regions where plague is present may also develop immunity, allowing rats and their associated fleas to survive longer than in other regions. Black rats' transmission of the Black Death in Europe was likely halted by a change in the Yersinia pestis bacterium that produced a milder version, inoculating rat populations against the plague. Rats serve as outstanding vectors for transmittance of diseases because they can carry bacteria and viruses in their systems. A number of bacterial diseases are common to rats, and these include Streptococcus pneumoniae, Corynebacterium kutsheri, Bacillus piliformis, Pasteurella pneumotropica, and Streptobacillus moniliformis, to name a few. As well as carrying zoonotic infections, R. rattus is also capable of transmitting diseases to native rat species, causing their decline when rattus is introduced. In addition to transmitting bacterial infections, black rats can also cary parasites such as Calodium, and protozoas including Toxoplasma gondii, many of which can be transmitted to humans. Predators The black rat is prey to cats and owls in domestic settings. In less urban settings, rats are preyed on by weasels, foxes and coyotes. These predators have little effect on the control of the black rat population because black rats are agile and fast climbers. In addition to agility, the black rat also uses its keen sense of hearing to detect danger and quickly evade mammalian and avian predators. ==As an invasive species==

Damage caused After Rattus rattus was introduced into the northern islands of New Zealand, they fed on the seedlings, adversely affecting the ecology of the islands. R. rattus is known to destroy the nests of native birds, causing up to 96% of total nest predations. Rats prefer to forage in forest habitats. In the Ogasawara islands, they prey on the indigenous snails and seedlings. Snails that inhabit the leaf litter of these islands showed a significant decline in population on the introduction of Rattus rattus. The black rat shows a preference for snails with larger shells (greater than 10 mm), and this led to a great decline in the population of snails with larger shells. A lack of prey refuges makes it more difficult for the snail to avoid the rat. Complex pest The black rat is a complex pest, defined as one that influences the environment in both harmful and beneficial ways. In many cases, after the black rat is introduced into a new area, the population size of some native species declines or goes extinct. This is because the black rat is a good generalist with a wide dietary niche and a preference for complex habitats; this causes strong competition for resources among small animals. This has led to the black rat completely displacing many native species in Madagascar, the Galapagos, and the Florida Keys. In a study by Stokes et al., habitats suitable for the native bush rat, Rattus fuscipes, of Australia are often invaded by the black rat and are eventually occupied by only the black rat. When the abundances of these two rat species were compared in different micro-habitats, both were found to be affected by micro-habitat disturbances, but the black rat was most abundant in areas of high disturbance; this indicates it has a better dispersal ability. Despite the black rat's tendency to displace native species, it can also aid in increasing species population numbers and maintaining species diversity. The bush rat, a common vector for spore dispersal of truffles, has been extirpated from many micro-habitats of Australia. In the absence of a vector, the diversity of truffle species would be expected to decline. In a study in New South Wales, Australia it was found that, although the bush rat consumes a diversity of truffle species, the black rat consumes as much of the diverse fungi as the natives and is an effective vector for spore dispersal. Since the black rat now occupies many of the micro-habitats that were previously inhabited by the bush rat, the black rat plays an important ecological role in the dispersal of fungal spores. By eradicating the black rat populations in Australia, the diversity of fungi would decline, potentially doing more harm than good. Pesticides, such as pindone and 1080 (sodium fluoroacetate), are commonly distributed via aerial spray by helicopter as a method of mass control on islands infested with invasive rat populations. Bait, such as brodifacoum, is also used along with coloured dyes (used to deter birds from eating the baits) in order to kill and identify rats for experimental and tracking purposes. Another method to track rats is the use of wired cage traps, which are used along with bait, such as rolled oats and peanut butter, to tag and track rats to determine population sizes through methods like mark-recapture and radio-tracking. Poison control methods are effective in reducing rat populations to nonthreatening sizes, but rat populations often rebound to normal size within months. Besides their highly adaptive foraging behaviour and fast reproduction, the exact mechanisms for their rebound is unclear and are still being studied. In 2010, the Sociedad Ornitológica Puertorriqueña (Puerto Rican Bird Society) and the Ponce Yacht and Fishing Club launched a campaign to eradicate the black rat from the Isla Ratones (Mice Island) and Isla Cardona (Cardona Island) islands off the municipality of Ponce, Puerto Rico. Specific areas New Zealand The first non-native species of rats introduced in New Zealand was Rattus norvegicus, or the brown rat, as R. norvegicus was currently the dominant rat in England. However, r. rattus became more common on ships in the mid-1800s, and black rats spread throughout New Zealand between the 1860s and 1880s. Brown rats were soon replaced as the dominant species by black rats, possibly due to their more optimal foraging habits. Due to their common behaviour of stealing eggs from bird nests, ship rats have caused a number of native bird species in New Zealand to become extinct, most recently the bush wren. Since the 1980s, many successful rat eradications have been performed across New Zealand's islands of R. rattus, R. norvegicus, and R. exulans, sometimes jointly, on islands such as Awaiti and Tawhitinui. However, black rats continue to have a major presence on mainland New Zealand, and are at one of the highest risks for reinfestation out of all species of invasive rodents. Decline in population Eradication projects have eliminated black rats from Lundy in the Bristol Channel (2006) and from the Shiant Islands in the Outer Hebrides (2016). Populations probably survive on other islands (e.g. Inchcolm) and in localised areas of the British mainland. Recent National Biodiversity Network data indicates very sparse populations around the U.K., and The Mammal Society has no records in the major port towns of Manchester, Liverpool or Glasgow for over 40 years, areas which were historically population strongholds. ==See also==