Accepted species in this genus include: •
Gobiodon acicularis Harold & R. Winterbottom, 1995 (Needlespine coral goby) •
Gobiodon albofasciatus Sawada & R. Arai, 1972 (Whitelined coral goby) •
Gobiodon aoyagii Shibukawa, T. Suzuki & Aizawa, 2013 •
Gobiodon ater Herler, Bogorodsky & T. Suzuki, 2013 (Black coralgoby) •
Gobiodon atrangulatus Garman, 1903 •
Gobiodon axillaris De Vis, 1884 •
Gobiodon bicalvolineatus Hildebrandt, C. A., Froehlich, C. Y. M., Brodnicke, O. B., Klanten, O. S., Møller, P. R., & Wong, M. Y. L., 2024 •
Gobiodon bilineatus Herler, Bogorodsky & T. Suzuki, 2013 (Two-lined coralgoby) •
Gobiodon burdigalicus Carolin, Bajpai, Maurya & Schwarzhans, 2022 (otolith-based fossil species) ==References==