Historically Since July 7, 1987, the
U.S. Fish and Wildlife Service (FWS) has listed
Gopherus polyphemus as "threatened" wherever the tortoises are found west of the
Mobile and
Tombigbee Rivers in Alabama, Mississippi, and Louisiana. On November 9, 2009, the FWS proposed rulemaking to include the eastern population of
G. polyphemus in the List of Threatened Wildlife. In October 2022, the FWS announced that the species overall and its eastern distinct population segment (DPS) did not warrant listing at that time.
G. polyphemus appears on the
IUCN Red List as a "Vulnerable" species; however, it has not been assessed for the purposes of this list since 1996. In 2018, the IUCN Tortoise and Freshwater Turtle Specialist Group recommended a reassessment and reclassification of all six
Gopherus species This reclassification would move
G. polyphemus from vulnerable to endangered. . (August 2019) The Conservation Clinic at the University of Florida's
Levin College of Law describes five main threats to the tortoise population -
habitat loss through human development, habitat loss through poor supervision, human desire to use it as a pet or eat it as meat (
see human predation), relocation causing population disruption, and disease caused by relocation. In Mississippi along State Route 63,
chain-link fences were built to prevent gopher tortoise mortality from traffic. These fences, made from heavy-gauge wire for durability, are 3 ft (1 m) high and are buried 1 ft below the surface. The fences have "turnarounds" at either end, which are angled fences that redirect tortoises back into the area from which they come. As of 2003, no roadside gopher tortoise deaths had been reported along Route 63 since the construction of the fences. On July 27, 2016, the
Florida Fish and Wildlife Conservation Commission issued a warning to residents and visitors to the state not to paint the shell of a gopher tortoise, as the paint can hinder their ability to convert vitamins they need by sunlight, cause respiratory problems, allow toxic chemicals into the bloodstream, and other harmful effects. The commission has also stated that it is illegal to do so otherwise. Head-start and release programs have been shown to be effective methods of combating gopher tortoise population decline. At the Yuchi Wildlife Management Area in Burke County, Georgia, during 2014 and 2015, 145 tortoises were released and tracked. Survival was variable throughout the study, but site fidelity remained high. Since tortoises were staying in the same area after release it could be a viable method of population recovery. Release strategy and predator mitigation are essential to its success.
Keystone species Gopher tortoises are known as a
keystone species. The
Florida Fish and Wildlife Conservation Commission states the gopher tortoise provides temporary or permanent refuge for as many as 350 to 400 species, whether the gopher tortoise is present or not. and
burrowing owls (
Athene cunicularia). Several species associated with gopher tortoise burrows are listed as endangered, threatened, or species of special concern by the FWS. Caterpillars of the moth
Ceratophaga vicinella feed on the shells of dead gopher tortoises. Additionally, gopher tortoise burrows may benefit plant life by exposing mineral soil favorable for germination. The taking of gopher tortoises for sale or use as food or pets has also had a serious effect on some populations, magnified by the length of time required for tortoises to reach maturity and their low reproductive rate. According to the website of the
Brevard Zoo in Melbourne, Florida, current estimates of human predation and road mortality alone are at levels that could offset any annual addition to the population, and sightings of gopher tortoises have become rare in many areas, with the ones sighted being much smaller than in the past. A number of other species also prey upon gopher tortoises; predators of eggs and young include
raccoons,
coyotes,
bobcats,
wild boars,
striped skunks,
eastern spotted skunks,
red-tailed hawks,
red-shouldered hawks,
bald eagles, and a number of snake species, including
eastern diamondback rattlesnakes, eastern indigo snakes,
coachwhips,
eastern racers,
common kingsnakes, and
Florida cottonmouths.
Red imported fire ants destroy many eggs and young tortoises. Adult gopher tortoises are less vulnerable to predation, but they are sometimes killed by
coyotes,
bobcats, and
domestic dogs and
cats.
Nine-banded armadillos may indirectly cause mortality by trapping them in caved-in burrows as they dig their own dens. In the past, about 83,955 gopher tortoises were incidentally taken (destroyed) and 137,759 acres of gopher tortoise habitat were permitted for development in Florida, as developers could acquire
Florida Fish and Wildlife Conservation Commission (FFWC) incidental take permits to build in the gopher tortoises' natural habitat. Additional gopher tortoise habitat was lost due to issuance of both special and standard tortoise relocation permits, but the total acreage of habitat lost and total number of gopher tortoises relocated cannot be estimated due to issuance of these two types of permits. Both the tortoise and their burrows are now protected under state laws. On July 31, 2007, the FFWC implemented new permitting rules requiring developers to relocate tortoises. Starting on April 22, 2009, three types of permits were available in Florida for developers wishing to build on gopher tortoise habitat. Two of these permits allow for the relocation of gopher tortoises, either to some other place on the site being used for construction, or to a recipient site that has been certified by the FFWC. The third type of permit allows for temporary relocation of tortoises while major utility lines are installed. In the third case, the tortoises are returned to their habitat after construction is complete.
Natural disaster threats Gopher tortoises are sensitive to the stability or quality of the environment where they live. Many anthropogenic disturbances to gopher tortoise habitat have occurred, such as fire regimens to maintain healthy ecosystems, disrupting potential vegetation that is essential to their diet. Though most research has been conducted on upland habitats for gopher tortoises, they also inhabit
sand dune ecosystems. Far less is known about these tortoises' role and niche within these coastal environments. This also means that they are threatened by human activity, causing these tortoises to be subject to
sea level rise and irregular and intense hurricane patterns. An increase in storm intensity can lead to the ultimate destruction of these coastal habitats and the species that occupy them, or at the very least displacement into other unsuitable habitats. Many of these habitats are located on Florida beaches, which have decreased due to development and have left less than 86,000 acres of wild lands. As a result of these storms, tortoises have been moving up in elevation and residing in abandoned burrows that are deeper be protected from the hurricanes. Researchers have growing concerns over costal gopher tortoises continuing to lose their habitat as populations are required to move to higher elevations, leading to higher burrow density and burrow sharing. Inhabitation of higher elevation habitats may result in more human contact, which may reduce coastal populations over time. Since many beaches in Florida run parallel to trafficked roads and are therefore fragmented ecosystems, this may directly decrease the survival of these coastal gopher tortoises before there is adequate research done to understand the ecological importance that the coastal gopher tortoises contribute.
Human predation Tortoises are subjected to predation by other animals, including humans. People have eaten gopher tortoises for thousands of years. During the
Great Depression, the gopher tortoise was known as the "
Hoover chicken" because they were eaten by poor people out of work. at an unsustainable rate, with some colonies being driven to extirpation. Moving a tortoise can lead to harmful consequences to the environment from which it came, because the tortoise is often not returned to where it was found. Also, as tortoise racing involves several tortoises in close proximity to one another, diseases can easily spread. If an infected captive tortoise is then returned to the environment, other tortoises may be infected.
Habitat loss In 1987, human urbanization and various human activities in Mississippi, Louisiana, and Alabama caused dramatic declines in the tortoise population, and the FWS listed them as "endangered". Though the population declined in Florida, Georgia, and South Carolina, they were not yet listed as threatened at the time. However, in recent years,
habitat loss is increasing as southern states continue to experience human population growth and expand on highway road construction. The southeast has had a 20% increase in human population between 1990 and 2000. These habitats are also pyrogenic which means that fragmentation has direct effects on the natural fire regime and therefore reduced habitat quality. Over its range in the southeast, four large core areas still provide the opportunity to protect large areas of tortoise habitat, as well the biological diversity of the coastal plain. They are (from west to east)
De Soto National Forest,
Eglin Air Force Base,
Apalachicola National Forest, and
Okefenokee Swamp in Florida. These areas offer an opportunity to restore forest stands and land areas containing populations of native vertebrate animals threatened by
habitat fragmentation. Restoring the natural causal factors of fire, especially, and flooding would also assist in restoring the plant and animal communities. If Florida's population doubles, of land, which is the size of Vermont, could be developed. of agricultural lands and of unused land will be developed. This will cause more competition for water resources between animals and humans. The low reproductive rate of the tortoise makes it more vulnerable to declines in longleaf ecosystem and extinction.
Habitat fragmentation Anthropogenic activity appears to not only result in habitat loss, but also habitat fragmentation. Turtles and tortoises are strongly impacted by railways, which can act as barriers to movement. Radio telemetry data show that gopher tortoises cross railways significantly less frequently than expected. Tortoises also have poor ability to escape from railways after entering the area between the rails. Railway-habituated tortoises (those believed to live near railways and interact with them) and naïve tortoises (those unlikely to frequently interact with railways) do not differ substantially in their railway escape behavior, suggesting that prior experience may not improve tortoises' ability to escape from railways that they have entered. Symptoms of URTDs include serous, mucoid, or purulent discharge from the nares, excessive tearing to purulent ocular discharge, conjunctivitis, and edema of the eyelids and ocular glands.
M. agassizii is known to exist in tortoises without showing obvious symptoms. Little is known about why some tortoises test positive and live for years, while others become seriously ill and die. However, there is no cure for URTD. Although long-term studies indicate URTDs can cause population declines in desert tortoise populations 10–15 years after initial infection, studies of such length have not been performed on
G. polyphemus. One study, which observed
G. polyphemus tortoises in Florida from 2003 to 2006, returned the unexpected observation that tortoises that were
seropositive for URTD antibodies were less likely to die over that time than seronegative tortoises. However, the habitats of more seropositive populations had more remains of dead tortoises. The investigators offered the explanation that seropositive tortoises had survived an initial infection, then developed chronic disease. This evidence may imply a possible
acute effect on mortality, followed by
chronic disease in surviving individuals. Further studies are needed to more fully understand the effects of URTD on this species. A study found that 14 of 35 Florida gopher tortoises tested positive for a bacterium provisionally called "
candidatus Anaplasma testudinis". These tortoises came into the animal hospitals with
anemia and
cytoplasmic vacuolization. This bacterial species can cause
anaplasmosis, thought to damage red blood cells. It can spread by ticks or other biological vectors and is transmittable, but not contagious. Since this disease was so prevalent within the tortoises studied, this disease is believed to occur frequently and is common in wild populations. This then becomes a pressing issue in terms of the conservation efforts put forward to decrease the likelihood of this disease affecting the population. Ticks are the predicted biological vectors, but identification of other potential carriers and which tick species are more likely to spread diseases to gopher tortoises are needed. ==Longleaf forest conservation==