The Grotthuss mechanism is now a general name for the proton-hopping mechanism. In liquid water the
solvation of the excess proton is idealized by two forms: the H9O4+ (
Eigen cation) or H5O2+ (
Zundel cation). While the transport mechanism is believed to involve the inter-conversion between these two solvation structures, the details of the hopping and transport mechanism is still debated. Currently there are two plausible mechanisms: • Eigen to Zundel to Eigen (E–Z–E), on the basis of experimental NMR data, • Zundel to Zundel (Z–Z), on the basis of
molecular dynamics simulation. The calculated energetics of the
hydronium solvation shells were reported in 2007 and it was suggested that the activation energies of the two proposed mechanisms do not agree with their calculated
hydrogen bond strengths, but mechanism 1 might be the better candidate of the two. By use of conditional and time-dependent
radial distribution functions (RDF), it was shown that the hydronium RDF can be decomposed into contributions from two distinct structures, Eigen and Zundel. The first peak in g(r) (the RDF) of the Eigen structure is similar to the equilibrium, standard RDF, only slightly more ordered, while the first peak of the Zundel structure is actually split into two peaks. The actual proton transfer (PT) event was then traced (after synchronizing all PT events so that t=0 is the actual event time), revealing that the hydronium indeed starts from an Eigen state, and quickly transforms into the Zundel state as the proton is being transferred, with the first peak of g(r) splitting into two. For a number of important gas phase reactions, like the hydration of
carbon dioxide, a Grotthuss-like mechanism involving concerted proton hopping over several water molecules at the same time has been shown to describe the reaction kinetics. This Grotthuss-like concerted proton transfer seems to be especially important for
atmospheric chemistry reactions, like the hydration of
sulfur oxides, and other reactions important for
ozone depletion.{{ cite journal|title=Toward elimination of discrepancies between theory and experiment: The gas-phase reaction of N2O5 with H2O|first=Andreas F.|last=Voegele|author2=Tautermann, Christofer S.|author3=Loerting, Thomas|author4=Liedl, Klaus R.|journal=Physical Chemistry Chemical Physics|year=2003|volume=5|issue=3|pages=487–495|doi=10.1039/b208936j cite journal|title=Reactions of HOCl + HCl + nH2O and HOCl + HBr + nH2O|first=Andreas F.|last=Voegele|author2=Tautermann, Christofer S.|author3=Loerting, Thomas|author4=Liedl, Klaus R.|journal=Journal of Physical Chemistry A|year=2002|volume=106|issue=34|pages=7850–7857|doi=10.1021/jp0255583 cite journal|title=Reactions of HOBr+ HCl+ nH2O and HOBr+ HBr+ nH2O|first=Andreas F.|last=Voegele|author2=Tautermann, Christofer S.|author3=Loerting, Thomas|author4=Liedl, Klaus R.|journal=Chemical Physics Letters|year=2003|volume=372|issue=3–4|pages=569–576|doi=10.1016/S0009-2614(03)00447-0 ==The anomalous diffusion of protons==