Molecular chaperones are typically referred to as proteins that associate with and help other proteins reach a native conformation while not being present in the end state. Chaperones bind to their substrate (i.e. a misfolded protein) in an ATP-dependent manner to perform a specific function. Exposed hydrophobic residues are a major problem with regards to protein aggregation because they can interact with one another and form hydrophobic interactions. It is the job of chaperones to prevent this aggregation by binding to the residues or providing proteins a "safe" environment to fold properly. Heat shock proteins are also believed to play a role in the presentation of pieces of proteins (or
peptides) on the cell surface to help the
immune system recognize diseased cells. The major HSPs involved in the HSR include HSP70, HSP90, and HSP60. When a nascent protein is being translated, HSP70 is able to associate with the hydrophobic regions of the protein to prevent faulty interactions until translation is complete. Post-translational protein folding occurs in a cycle where the protein becomes bound/released from the chaperone allowing burying hydrophobic groups and aiding in overcoming the energy needed to fold in a timely fashion. HSP70 plays a part in de-aggregating proteins using the aforementioned mechanism; the chaperone will bind to exposed hydrophobic residues and either partially or fully disassemble the protein, allowing HSP70 to assist in the proper refolding. When proteins are beyond the point of refolding, HSP70s can help direct these potentially toxic aggregates to be degraded by the proteasome or through autophagy. HSP90s are parallel to HSP70s with respect to the refolding or proteins and use in protein clearance. Once a cap binds to the chaperonin, the protein is free within the barrel to undergo
hydrophobic collapse and reach a stable conformation. Once the cap is removed, the protein can either be correctly folded and move on to perform its function or return to a HSP if it is still not folded accurately. These chaperones function to remove aggregation and significantly speed up protein folding. ==Discovery==