Pigmentation SNPs found within the HERC2 gene are strongly associated with
iris colour variability in humans, through effects on the expression of the downstream gene
OCA2. In particular, two
intronic SNPs, rs916977 and rs12913832, have been reported as good predictors of this trait, and the latter is also significantly associated with
skin and
hair colour. Nonetheless, the ancestral
allele is associated with darker pigmentation and dominant over the lighter pigment recessive allele. The rs12913832 SNP, located in intron 86 of the HERC2 gene contains a silencing sequence that can inhibit the expression of OCA2 and, if two copies of the recessive allele are present, can result in
blue eyes. This
genotype is present in almost all people with blue eyes and is hypothesised as being the founder mutation of blue eyes in humans. The rs916977 SNP is most common in
Europe; particularly in the north and east, where it nears fixation. The variant is also found at high frequencies in
North Africa, the
Near East,
Oceania and the
Americas.
DNA repair pathways HERC2 is a component of the
replication fork and essential for DNA damage repair pathways. Regulating DNA repair pathways is necessary, as unchecked they can target and excise undamaged DNA, potentially leading to mutation. It is involved in coordinating the
Chk1-directed DNA damage/cell cycle checkpoint response by regulating the stability of the deubiquitination enzyme
USP20. Under normal conditions HERC2 associates with USP20 and ubiquitinates it for degradation. Under replication stress, for example a
DNA polymerase mismatch error, USP20 disassociates from HERC2 and deubiquitinates
claspin, stabilising it to then bind and activate Chk1. This allows for DNA replication to be paused and the error corrected. At the site of doubles stranded breaks, HERC2 facilitates the binding of
RNF8, a RING finger ubiquitin ligase to the E2 ubiquitin-conjugating enzyme UBC13. This association is required for RNF8 mediated Lys-63 poly-ubiquitination signalling, which both recruits and retains repair factors at the site of DNA damage to commence
homologous recombination repair. HERC2 is also involved in regulating
nucleotide excision repair by ubiquitinating the
XPA repair protein for proteolysis. XPA is involved in recognising DNA damage and provides a scaffold for other repair factors to bind at the damage site.
Centrosome assembly HERC2 has been implicated in regulating stable
centrosome architecture in conjunction with NEURL4 other ubiquitinated binding partners. Its absence is associated with aberrant centrosome morphology.
Iron metabolism HERC2 has recently been associated with regulating iron metabolism through ubiquitinating the F-box and leucine-rich repeat protein 5 (
FBXL5) for proteasomal degradation. FBXL5 regulates the stability of the iron regulatory protein (IR2), which in turn controls the stability of proteins overlooking cellular iron homeostasis. Depletion of HERC2 results in decreased cellular iron levels. Iron is an essential nutrient in cells, but high levels can be cytotoxic, so maintaining cellular levels is important. == Clinical significance ==