The club was established in 1929 and joined the King's Lynn League, before playing in the Spalding and Boston leagues. They joined Division Two of the
Peterborough & District League in 1936, and were promoted to Division One in 1938. They were Division One runners-up in 1945–46 and moved up to the
United Counties League. When the league gained a second division in 1950, Holbeach became members of Division One and were runners-up in
1953–54. The club were runners-up in their
first season back in the league and won the League Cup in 1964–65. When the United Counties League was reorganised in 2021, Holbeach were placed in the Premier Division North. They finished bottom of the division in
2021–22 and were relegated to Division One North of the Eastern Counties League. ==Ground==