The station originally opened in April 1913 as a
Long Island Rail Road (LIRR) station, which replaced the former 1899-built
Ramblersville station that was built to the south. In 1923, the station was retrofitted with sheltered sheds on both sides of the tracks. On May 8, 1950, a fire broke out between
The Raunt and
Broad Channel stations, destroying the trestle over
Jamaica Bay, cutting service between
Hamilton Beach and the Rockaways. The LIRR was bankrupt and unwilling to rebuild the trestle. As a result, the line was sold to the
New York City Transit Authority in 1952. On June 28, 1956, the station reopened as a subway station along with the rest of the line. The previous Long Island Rail Road station at this location was razed. Inauguration ceremonies were held at the station as well as at
Euclid Avenue in Brooklyn. In June 1978, the
Metropolitan Transportation Authority (MTA) announced plans for an "experimental" subway-bus service between Manhattan and JFK Airport, terminating at the Howard Beach subway station where passengers could transfer to a free shuttle bus to the airport. The
JFK Express began operation on September 23, 1978, operating as a premium service, with riders paying the additional fare on board. The service ran express on the
IND Sixth Avenue Line to
West Fourth Street–Washington Square, where it switched to the
IND Eighth Avenue Line and ran express to
Jay Street–Borough Hall in
Downtown Brooklyn. From that point on, it ran non-stop on the
IND Fulton Street Line and
IND Rockaway Line to Howard Beach–JFK Airport. The bus service, connecting the station and JFK, continued after JFK Express service ended, and was the only link between the airport and the Howard Beach station at the time. The station was extensively reconstructed in the early 2000s, undergoing a $50 million overhaul to connect the subway station to the new
AirTrain JFK. The project was designed by
STV Group and financed by the
Port Authority of New York and New Jersey. During the reconstruction of the station, the original subway platforms were demolished and temporary platforms were erected in the center trackways while the new platforms and mezzanine were built. During off-peak hours, trains utilized a single track. The AirTrain structure around the station was completed in 2001, and the AirTrain station opened and began charging fares on December 17, 2003, at which time the free shuttle bus was discontinued. The AirTrain was designed with the same track height and track gauge as those of the subway, to facilitate a future extension of the subway over the AirTrain system. Due to extensive damage to the IND Rockaway Line by
Hurricane Sandy in 2012, this was the southern terminal for A trains that normally traveled to
the Rockaways while the line south of the station was being repaired. Full service to the Rockaways was restored on May 30, 2013. Starting in January 2025, southbound A service to the Rockaways was again truncated to Howard Beach–JFK Airport for four months. ==Station layout==