Hypoponera punctatissima is a yellowish-brown to dark-brown colored ant measuring 2.5-3.2mm, with short, stiff
setae coating its head and body. The ant's
mandibles are triangular in shape and its
antennae have 12 total segments. The ant has a single-segmented
petiole, as it is a member of the
ponerinae sub-family where all members features single-segmented petioles. The ant's
gaster has a constriction between the first two segments, with the first two segments also being twice the length of longer than remaining segments. As the ant nears the larger end of its size range, the colour can darken and as the ant approaches its smaller range it can be a lighter, more yellowish colour however the correlation is not a very consistent rule. Queens of the species are very similar to the working caste, however are slightly larger and bear wings for flight, as well as having the remanent of their enlarged wing muscles. Queens also are slightly larger, measuring 3.5-3.8mm.
Ergatoid males of this species fall into two categories, the first group being smaller, yellower and eyeless and the second being larger, darker colored and retaining their eyes.
Alate males have not yet been observed and are assumed to not be present in this species. Males are typically slightly smaller than queens but larger than workers, measuring 3.4-3.6mm. ==Subspecies==