The first step in immunoperoxidase staining is the binding of the specific (primary) antibody to the cell or tissue sample. The detection of the primary antibody can be then accomplished
directly (example 1) or
indirectly (examples 2 & 3). :
Example 1. The primary antibody can be directly tagged with the enzyme
peroxidase which is then used to catalyse a chemical reaction to generate a coloured product. :
Example 2. The primary antibody can be tagged with a small molecule that can be recognised by a peroxidase-conjugated binding molecule with high affinity. The most common example of this is a
biotin linked primary antibody that binds to an enzyme-bound
streptavidin. This method can be used to
amplify the signal. :
Example 3. An untagged primary antibody is detected using a general
secondary antibody that recognises all antibodies originating from same animal species as the primary. The secondary antibody is tagged with peroxidase. Optimal staining depends on a number of factors including the antibody dilution, the staining chemicals, the preparation and/or fixation of the cells/tissue, and length of incubation with antibody/staining reagents. These are often determined by
trial and error rather than any sort of systematic approach. ==Alternatives to peroxidase stains==