Discovery One of the first JAKs targeted in
drug development for medical use was JAK3. Immune system depression is observed in patients with JAK3 defects. The role of JAK3 is greatly restricted to the immune system, so this enzyme was thought to be a good target for selective
immunosuppressant. The first JAK inhibitor approved for the treatment of rheumatoid arthritis was
tofacitinib. It has also shown promising results in other autoimmune disorders. Developing sufficiently selective JAK3 inhibitors has been difficult. One of the reason is the small variation in the
ATP binding site of different JAKs. Another problem is that JAK3 has a higher affinity for ATP than the other JAKs, which can be a reason for a poor translation from
in vitro enzymatic assay studies to cellular system studies.
Structure activity relationship JAK3 inhibitors target the catalytic
ATP-binding site of JAK3 and various moieties have been used to get a stronger affinity and selectivity to the ATP-binding pockets. The base that is often seen in compounds with selectivity for JAK3 is
pyrrolopyrimidine, as it binds to the same region of the JAKs as purine of the ATP binds. Sequence alignment has shown that the ATP binding pockets of the JAKs are almost identical and only a few features distinguish JAK3 from the rest. One of these differences is the presence of
cysteine residue (Cys909) in the front region of the ATP binding pocket, where the other JAKs have serine at that same position. Only 10 other kinases possess a cysteine at that location, making cysteine even more intriguing as a target for a better selectivity. To compare inhibitors, the parameter of choice is
IC50; by measuring IC50 for different JAKs, determining selectivity is possible. In the kinase family, JAK3 has the highest affinity for ATP, so measuring IC50 in high concentrations of ATP show whether the inhibitor can compete with ATP for the binding site. == Medical use ==