Taylor returned to the United States in 1901 and was detailed to the
Bureau of Insular Affairs where he supervised the filing, selection and translation of a representation of some of the 200,000 documents from that conflict. For five years Taylor supervised the transcription and translation (from Spanish or Tagalog) of these documents in order to present what he claimed would be a "truthful version" of the Philippine revolution and the subsequent war between the Philippine revolutionaries and the American colonialists. In his letter of transmittal for the compilation, Taylor wrote of the documents in the compilation: Taylor ordered the Government Printing Office to typeset galley proofs, with two volumes dedicated to his analytical history of US-Philippine relations and three other volumes containing 1,340 supporting papers of original documents. Then Secretary of War
William Howard Taft decided to defer its publication for fear of antagonizing both Americans and Filipinos. In 1909 a second attempt was made to publish the volumes when President Taft's former secretary
James A. LeRoy wrote a scathing critique objecting to its publication. The Bureau of Insular Affairs then abandoned the project. It was subsequently published in the Philippines in 1968 by the
Eugenio Lopez Foundation. John R. M. Taylor was not shy in stating his opinions. "The mass of the people of the Philippines – the men who work and have no desire to live from contributions levied upon their neighbors – welcomed the crushing of the Katipunan." Also more damaging: "The government which Aguinaldo established did not represent the aspirations of the men who were best entitled to be consulted. He played upon his people as an instrument... he deceived the Spaniards, the Americans, and the Filipinos in Hong Kong alive; fraud and murder were the instruments upon which he relied to cut out the path for his ambition." In the 1968 foreword to the publication of John Taylor's magnum opus, historian
Renato Constantino wrote that notwithstanding the openly anti-Filipino bias, the collection of original documents itself would "make available to Philippine scholars a part of the voluminous file of original documents of the Philippine Revolution." ==Re-evaluation==