Mattauch returned to Vienna in 1928 as an unpaid lecturer. In 1938 Lise Meitner fled Germany after the Nazi occupation of Austria changed her citizenship from Austrian to German, making her subject to the
antisemitic Nuremberg Laws of 1935. On 1 November 1943 Mattauch advanced to the position of deputy director of the Institute. On 15 February 1944 and again on 24 March 1944, as part of the
Bombing of Berlin in World War II, the Institute suffered severe bombing damage. As of 1 October 1946, Hahn resigned as director of the Kaiser Wilhelm Institute of Chemistry, leaving Mattauch to manage the Institute. However, Mattauch suffered from
tuberculosis Mattauch and
Fritz Strassmann actively supported the proposed appointment of
Lise Meitner as head of the physics department of the
University of Mainz. Hahn and Strassman asked Meitner to return as director, but she declined their offer. Also in 1949, the renamed
Max Planck Institute for Chemistry moved from Tailfingen to
Mainz,
Germany. At this time it consisted of two departments: Mass Spectrometry and Nuclear Physics was Mattauch's department, while Nuclear Chemistry was Strassmann's department. Mattauch retired in 1965.
Christian Junge (1912-1996) succeeded Josef Mattauch as director of the Institute on October 1, 1968. Josef Heinrich Elisabeth Mattauch died 10 August 1976 in
Klosterneuburg,
Austria. ==Research==