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Kingdom (biology)

In biology, a kingdom is the second highest taxonomic rank, just below domain. Kingdoms are divided into smaller groups called phyla.

Definition and associated terms
When Carl Linnaeus introduced the rank-based system of nomenclature into biology in 1735, the highest rank was given the name "kingdom" and was followed by four other main or principal ranks: class, order, genus and species. Later two further main ranks were introduced, making the sequence kingdom, phylum or division, class, order, family, genus and species. In 1990, the rank of domain was introduced above kingdom. == History ==
History
Two kingdoms of life The classification of living things into animals and plants is an ancient one. Aristotle (384–322 BC) classified animal species in his History of Animals, while his pupil Theophrastus ( – ) wrote a parallel work, the Historia Plantarum, on plants. Carl Linnaeus (1707–1778) laid the foundations for modern biological nomenclature, now regulated by the Nomenclature Codes, in 1735. He distinguished two kingdoms of living things: Regnum Animale ('animal kingdom') and Regnum Vegetabile ('vegetable kingdom', for plants). Linnaeus also included minerals in his classification system, placing them in a third kingdom, Regnum Lapideum. Three kingdoms of life '' with plants. In 1674, Antonie van Leeuwenhoek, often called the "father of microscopy", sent the Royal Society of London a copy of his first observations of microscopic single-celled organisms. Until then, the existence of such microscopic organisms was entirely unknown. Despite this, Linnaeus did not include any microscopic creatures in his original taxonomy. At first, microscopic organisms were classified within the animal and plant kingdoms. However, by the mid–19th century, it had become clear to many that "the existing dichotomy of the plant and animal kingdoms [had become] rapidly blurred at its boundaries and outmoded". In 1860 John Hogg proposed the Protoctista, a third kingdom of life composed of "all the lower creatures, or the primary organic beings"; he retained Regnum Lapideum as a fourth kingdom of minerals. In the 1960s, Roger Stanier and C. B. van Niel promoted and popularized Édouard Chatton's earlier work, particularly in their paper of 1962, "The Concept of a Bacterium"; this created, for the first time, a rank above kingdom—a superkingdom or empire—with the two-empire system of prokaryotes and eukaryotes. Five kingdoms The differences between fungi and other organisms regarded as plants had long been recognised by some; Haeckel had moved the fungi out of Plantae into Protista after his original classification, The resulting five-kingdom system, proposed in 1969 by Whittaker, has become a popular standard and with some refinement is still used in many works and forms the basis for new multi-kingdom systems. It is based mainly upon differences in nutrition; his Plantae were mostly multicellular autotrophs, his Animalia multicellular heterotrophs, and his Fungi multicellular saprotrophs. The remaining two kingdoms, Protista and Monera, included unicellular and simple cellular colonies. Following publication of Whittaker's system, the five-kingdom model began to be commonly used in high school biology textbooks. Six kingdoms In 1977, Carl Woese and colleagues proposed the fundamental subdivision of the prokaryotes into the Eubacteria (later called the Bacteria) and Archaebacteria (later called the Archaea), based on ribosomal RNA structure; This six-kingdom model is commonly used in recent US high school biology textbooks, but has received criticism for compromising the current scientific consensus. But the division of prokaryotes into two kingdoms remains in use with the recent seven kingdoms scheme of Thomas Cavalier-Smith, although it primarily differs in that Protista is replaced by Protozoa and Chromista. As mitochondria were known to be the result of the endosymbiosis of a proteobacterium, it was thought that these amitochondriate eukaryotes were primitively so, marking an important step in eukaryogenesis. As a result, these amitochondriate protists were separated from the protist kingdom, giving rise to the, at the same time, superkingdom and kingdom Archezoa. This superkingdom was opposed to the Metakaryota superkingdom, grouping together the five other eukaryotic kingdoms (Animalia, Protozoa, Fungi, Plantae and Chromista). This was known as the Archezoa hypothesis, which has since been abandoned; later schemes did not include the Archezoa–Metakaryota divide. Cavalier-Smith no longer accepted the importance of the fundamental Eubacteria–Archaebacteria divide put forward by Woese and others and supported by recent research. Summary The kingdom-level classification of life is still widely employed as a useful way of grouping organisms, notwithstanding some problems with this approach: • Kingdoms such as Protozoa represent grades rather than clades, and so are rejected by phylogenetic classification systems. • The most recent research does not support the classification of the eukaryotes into any of the standard systems. In 2009, Andrew Roger and Alastair Simpson emphasized the need for diligence in analyzing new discoveries: "With the current pace of change in our understanding of the eukaryote tree of life, we should proceed with caution." Kingdoms are rarely used in academic phylogeny and are more common in introductory education, where 5–6 kingdom models are preferred. == Beyond traditional kingdoms ==
Beyond traditional kingdoms
While the concept of kingdoms continues to be used by some taxonomists, there has been a movement away from traditional kingdoms, as they are no longer seen as providing a cladistic classification, where there is emphasis in arranging organisms into natural groups. In 1990, the name "domain" was proposed for the highest rank, with Latin equivalent regio. There is no consensus on how many kingdoms exist in the classification scheme proposed by Woese. Eukaryotic supergroups In 2004, a review article by Simpson and Roger noted that the Protista were "a grab-bag for all eukaryotes that are not animals, plants or fungi". They held that only monophyletic groups should be accepted as formal ranks in a classification and that – while this approach had been impractical previously (necessitating "literally dozens of eukaryotic 'kingdoms) – it had now become possible to divide the eukaryotes into "just a few major groups that are probably all monophyletic". On this basis, the diagram opposite (redrawn from their article) showed the real "kingdoms" (their quotation marks) of the eukaryotes. The published classification deliberately did not use formal taxonomic ranks, including that of "kingdom". |label1=Domain Archaea |1= }} |1= }} }} }} In this system the multicellular animals (Metazoa) are descended from the same ancestor as both the unicellular choanoflagellates and the fungi which form the Opisthokonta. and a review in 2006 noted the lack of evidence for several of the six proposed supergroups. , there is widespread agreement that the Rhizaria belong with the Stramenopiles and the Alveolata, in a clade dubbed the SAR supergroup, so that Rhizaria is not one of the main eukaryote groups. Prokaryotic kingdoms The Prokaryotic Code treats Bacteria and Archaea each as a domain. Since 2024, each domain contains 4 kingdoms, for a total of 8. Domain Bacteria includes kingdoms Bacillati, Fusobacteriati, Pseudomonadati and Thermotogati. Domain Archaea includes kingdoms Methanobacteriati, Nanobdellati, Promethearchaeati and Thermoproteati. Comparison of top level classification Some authors have added non-cellular life to their classifications. This can create a "superdomain" called "Acytota", also called "Aphanobionta", of non-cellular life; with the other superdomain being "cytota" or cellular life. (see section below for further discussion) The eocyte hypothesis proposes that the eukaryotes emerged from a phylum within the archaea called the Thermoproteota (formerly known as eocytes or Crenarchaeota). == Viruses ==
Viruses
There is a large, but not absolute, consensus that viruses are not alive. However, for the sake of convenience, the International Committee on Taxonomy of Viruses uses the taxonomic rank "kingdom" in the classification of viruses (with the suffix -virae); this is beneath the top level classifications of realm and subrealm, classifying viruses using binomial nomenclature like living organisms. Arguments against viruses being alive include the fact that they are obligate intracellular parasites that lack metabolism and are not capable of replication outside of a host cell. Another argument is that their placement in the tree would be problematic, since it is suspected that viruses have various evolutionary origins, and they have a penchant for harvesting nucleotide sequences from their hosts. == See also ==
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