Debate remains as to whether the kokanee has enough genetic distinction to be classified as a
subspecies or a separate species from the sockeye salmon. Genetic evidence suggests that the evolution of landlocked sockeye has occurred more than once with different kokanee populations, showing genetic differences between populations. Most evidence points to events that land-locked the lake-type sockeye (which spawns in streams and lakes, rather than tributaries like the sea-type sockeye, but is still anadromous and spends most of its adult life out at sea), which evolved into the nonanadromous form. Studies done in
Okanagan Lake in British Columbia and
Lake Sammamish in Washington suggested that the genetic diversity between the lake-type sockeye and the kokanee marks the divergence of two species because cohabitating sockeye and kokanee did not
interbreed, despite the fact that interbreeding was possible. Some morphological divergences are seen between the kokanee and sockeye. The most noticeable difference is size. The kokanee is often smaller than the sockeye due to less nutrient availability in
fresh water. Other morphological differences include higher
gill raker counts in the kokanee, failure to develop the changes that allow the sockeye to transition between fresh and salt water, and juvenile kokanee's lower mean swim velocity compared to juvenile sockeye. Egg sizes are also a difference. Due to its size, the kokanee should theoretically have smaller eggs to increase
fecundity. In reality, the kokanee egg size varies, though the energetic cost of larger eggs can limit the fecundity of kokanee populations. Studies have found that kokanees can extract
carotenoids (which provide red pigmentation during breeding) from food better than sockeyes due to
sexual selection and
mate choice. Again, the degree of morphological variation, such as gill raker count, can vary from population to population. The Japanese kokanee, also known as the kunimasu salmon or black kokanee, is considered a subspecies of the sockeye salmon by some, or even a separate species
Oncorhynchus kawamurae, and occurs naturally in
Lakes Akan and Chimikeppu in
Hokkaido. The Japanese kokanee varies from its sea-going sockeye relative in a few ways. The black kokanee breeds in March at a depth of 30–40 feet, while sockeye salmon breed in the fall and have a different number of gill rakers than the kokanee. In addition, the black kokanee is much darker in color than the sockeye or any other kokanee population. The fish has been introduced to different lakes around Japan for
commercial fishing practices. It seems that commercial
captive-breeding programs, the introduction of non-native kokanee populations from Canada, and a population crash have decreased the genetic distinctiveness between the black kokanee and its sockeye relatives. These factors have also caused a decrease in native kokanee populations. ==Identification, lifecycle, and development==