The Lincoln High School Lions compete in the
Hudson County Interscholastic League, which is comprised of public and private high schools in Hudson County. The league operates under the supervision of the
New Jersey State Interscholastic Athletic Association (NJSIAA). With 493 students in grades 10–12, the school was classified by the NJSIAA for the 2019–20 school year as Group II for most athletic competition purposes, which included schools with an enrollment of 486 to 758 students in that grade range. The football team competes in the National Red division of the
North Jersey Super Football Conference, which includes 112 schools competing in 20 divisions, making it the nation's biggest football-only high school sports league. The school's co-op team with
Palisades Park High School was classified by the NJSIAA as Group IV North for football for 2024–2026, which included schools with 893 to 1,315 students. The boys track team won the public school indoor track state championship in 1940 and 1948, won the Group II title in 1969 and won the Group III title in 1970, 1971 (as co-champion), 1974; the program's seven state titles are tied for ninth in the state. The girls team was the all-group co-champion in 1979. The boys' track team won the Group IV spring / outdoor track state championship in 1941 and won the Group II title in 1970. The boys' track team won the Group III indoor relay championships in 1967, 1968 and 1969, won in the combined Group I/II in 1970 and 1974, and won in Group III in 1976. The six state championships are tied for seventh-most among the state's high schools. The 1981 football team finished the season with a 9–2 record after winning the NJSIAA North I Group III state sectional title with a 22–14 victory against
Lakeland Regional High School in the championship game. In 2009 the Lions finished the season at 8–2, losing in the first round of the NJSIAA North II Group I state playoffs. In 2010, the Lions built on their wave of success, going 7-2 during the regular season, the Lions went back to the playoffs. Their regular season highlight was erasing an 18–0 deficit to
Hoboken High School to win 42–18. In the 2010 NJSIAA North II Group I playoffs, the Lions defeated
Glen Ridge High School 36–19, and
Jonathan Dayton High School 42-14 all on the road to advance to the North II Group I sectional championship game against
New Providence High School, losing by a score of 21–8 at
New Meadowlands Stadium. The Lions went on to the NJSIAA state championship final losing by a score 36-28 vs.
Mountain Lakes High School in 2014 in the North II Group II final and lost 28-26 vs.
Raritan High School in 2015 on a touchdown scored with seconds left in the Central Jersey Group II finals. the head coach of the Lincoln Lions is Robert Hampton, who has been the team's coach since the 2005–06 season. The boys' basketball team won the North I, Group III state sectional championship in 2002 with a 50–41 win against
Sparta High School in the tournament final. The 2006–07 team won the HCIAA championship over now defunct
Union Hill High School, winning by a score of 50–46. The 2008 team won the North II, Group II state sectional title with a 61–58 win over
Orange High School in the tournament final. In 2008, the basketball team went on to win the school's first Group II state title with an 88–70 victory against
Collingswood High School. The girls' basketball team won the North II Group II sectional championship in 2019, becoming the first public school team for Jersey City to win a sectional title, with a 43–41 win over
Secaucus High School. The team was declared as the North II regional champion in 2020, after the finals were cancelled due to COVID. ==Administration==