Former Governmental flags File:Flag of the Ministry of Defence of the Republic of Indonesia, 2005(?)-January 2022.svg|Flag of the Ministry of Defence, used from 2005(?) until January 2022 File:Flag of the Ministry of State Apparatus Utilization and Bureaucratic Reform of the Republic of Indonesia.png|Flag of the Ministry of State Apparatus Utilization and Bureaucratic Reform, used from 2011(?) until 2021 File:Flag of the Ministry of Villages, Development of Disadvantaged Regions, and Transmigration of the Republic of Indonesia.svg|
Ministry of Villages, Development of Disadvantaged Regions, and Transmigration, used from 2015 until 2024 File:Flag of the Ministry of Health of the Republic of Indonesia.png|
Ministry of Health, used from 2016 until 2024 File:Flag of the Ministry of Tourism and Creative Economy of the Republic of Indonesia.png|
Ministry of Tourism and Creative Economy, used from 2020 until 2024 File:Flag of the Indonesian Ministry of Cooperatives and Small & Medium Enterprises.png|
Ministry of Cooperatives and Small & Medium Enterprises, used from 2021 until 2024 File:Flag of the Ministry of Investment of the Republic of Indonesia.png|
Ministry of Investment, used from 2021 until 2024 === Flags of the
United States of Indonesia ===
States and autonomous areas File:Flag of Indonesia.svg|
State of the Republic of Indonesia (1949–1950) File:Banjar Sultanate Flag.svg|
Banjar (1948–1950) File:Flag of the State of East Indonesia.svg|
East Indonesia (1946–1950) File:Flag of Various Autonomous Indonesian States.svg|
East Java (1948–1950) File:Flag of East Sumatra.svg|
East Sumatra (1947–1950) File:Flag of Dayak Besar.svg|
Great Dayak (1946–1950) File:Flag of Various Autonomous Indonesian States.svg|
Madura (1948–1950) File:Flag of Pasundan (Separatist).svg|
Pasundan State (1947) File:Flag of Pasundan.svg|State of
Pasundan (1948–1950) File:Flag of South Sumatra.svg|
South Sumatra (1948–1950) File:Flag of the Kingdom of Kotawaringin.svg|
Kotawaringin (1949‒1950)
Government of East Indonesia File:Flag of the President of East Indonesia.svg|Presidential standard of the
president of the State of East Indonesia File:Pennant of the President of East Indonesia.svg|Pennant of the President of East Indonesia File:Flag of the Prime Minister of East Indonesia.svg|Flag of the
Prime Minister of East Indonesia File:Flag of the Minister of East Indonesia.svg|Flag of the Minister of East Indonesia File:Flag of the Deputy Minister of East Indonesia.svg|Flag of the Deputy Minister of East Indonesia File:Flag of the Speaker of the Provisional Representative Body of East Indonesia.svg|Flag of the Speaker of the
Provisional Representative Body of East Indonesia Government of South Sumatra File:Flag of Wali Negara of East Sumatra.png|Flag of the Wali Negara of East Sumatra
Former province File:Flag of Timor Timur.svg|Flag of
East Timor during
Indonesian occupation Pre-colonial states and kingdoms ====
Borneo ==== ====
Java and
Madura ==== ====
Sulawesi ==== ====
Sumatra ==== {{gallery|width=120|height=120|noborder=yes|whitebg=no ====
Lesser Sunda Islands ==== ====
Maluku Islands ==== ====
New Guinea ====
Chola invasion of Sumatra File:Flag of Chola Kingdom.png|Flag of the
Chola dynasty (1030–1070)
Ottoman flags of Aceh File:Flag of Ottoman Empire (1517-1793).svg|Flag of the
Ottoman Empire (1569–1793) File:Flag of the Ottoman Empire (eight pointed star).svg|Flag of the
Ottoman Empire (1793–1844) File:Flag of the Ottoman Empire (1844–1922).svg|Flag of the
Ottoman Empire (1844–1903) File:Imperial standard of the Ottoman Sultan.svg|Imperial Flag of the
Ottoman Sultan (1900–1903)
Qing flags of Lanfang File:Flag of China (1862–1889).svg|Flag of the
Qing China (1862–1884) File:Imperial standard of the Qing Emperor.svg|Imperial flag of the
Qing Emperor (1862–1884) File:Lanfang Republic Reconstructed (Luo Xianglin).svg|
Lanfang Republic Flag (
Luo Xianglin's rendition) File:Lanfang Republic Reconstructed Flag.svg|
Lanfang Republic Flag (Kao Chung Xi's rendition) File:Lanfang Presidential Penant.svg|Pennant of the President of Lanfang
Colonial-era flags File:Flag of Portugal (1495).svg|Flag of
Portugal (flown 1512–1521) File:Flag of Portugal (1521).svg|Flag of
Portugal (1521–1578) File:Flag of Portugal (1578).svg|Flag of
Portugal (1578–1640) File:Flag of Cross of Burgundy.svg|Flag of The
Iberian Union (1580–1640) File:Estandarte real de 1580-1668.svg|Royal Flag of
Philip II of Spain (1580–1640) File:Estandarte Real de Felipe II.svg|Banner of Arms of
House of Habsburg (1580–1640) File:Prinsenvlag.svg|
The Prince's Flag (1610–1795) File:Flag of the Dutch East India Company (Prinsenvlag).svg|First Flag of the
Dutch East Indies Company (1610–1795) File:Flag of Portugal (1616).svg|Flag of
Portugal (1616–1640) - Putative flag File:Flag of the Dutch East India Company.svg|
Dutch East India Company flag, adopted with red stripe around 1630 or 1663 and beyond, for the purpose of better visibility at sea against a light sky File:Maritime flag of Batavia.svg|Maritime flag of
Batavia (18th century) File:Collectie NMvWereldculturen, RV-03-226, Vlag- Vlag, onbekend.jpg|Maritime flag of
Batavia (18th century) File:Flag of Portugal (1640).svg|Flag of
Portugal (1640–1667) File:Statenvlag.svg|
States Flag (1652–1796) File:Flag of Portugal (1667).svg|Flag of
Portugal (1667–1707) File:Flag of Portugal (1707).svg|Flag of the
Portuguese Empire (1706–1750, 1826–1830) File:Flag of the Dutch East Indies Company.svg|Flag of the
Amsterdam Chamber of the
Dutch East Indies Company File:Flag of Portugal (1750).svg|Flag of the
Portuguese Empire (1750–1816) File:Flag of France (1794–1815, 1830–1958).svg|
First French Empire (
1806–1811) File:Flag of the Batavian Republic.svg|
Flag of the Batavian Republic (1796–1806) File:Imperial Standard of Napoléon I.svg|Imperial Standard of The
First French Empire File:Flag of the United Kingdom (1-2).svg|
British Empire (
1811–1816) File:Flag of the British East India Company (1801).svg|
British East India Company (1811–1815) File:Royal Standard of the United Kingdom 1801-1816.svg|Royal Standard of The
United Kingdom File:Flag of the United Kingdom of Portugal, Brazil, and Algarves.svg|Flag of the
United Kingdom of Portugal, Brazil and Algarves (December 1815 – September 1822) File:Royal Standard of the Netherlands (1815–1908).svg|Royal Flag of The
Netherlands (1816–1908) File:Flag of Portugal (1830).svg|Flag of
Portugal, land use (1830–1850) File:Flag Portugal sea (1830).svg|Flag of
Portugal, sea use (1830–1850)
Dutch East Indies File:Royal Standard of the Netherlands (1908–2013).svg|Royal Flag of The Netherlands (1908–1949) File:Flag of the Netherlands.svg|Flag of the
Dutch East Indies File:Gouverneur-Generaal Nederlands-Indië vlag en brede wimpel.svg|Flag and pennant of the
Governor of the Dutch East Indies (1800–1949) File:Onderscheidingsvlag Gouverneur (tot 1954).png|Distinctive flag of the
Governor of the Dutch East Indies (1800–1928) File:Onderscheidingsvlag Gouverneur Nederlands-Indie (1928-1949).svg|Distinctive flag of the
Governor of the Dutch East Indies (1928–1949) File:Onderscheidingsvlag Resident Nederlands-Indie (1928-1949).svg|Distinctive flag of a resident of the Dutch East Indies (1928-1949) File:Flag of West Papua.svg|Flag of
Dutch New Guinea (1961–1962) File:Onderscheidingsvlag Gouverneur overzees gebiedsdeel (1954-1966).svg|Distinctive flag of the
Governor of the Dutch New Guinea (1930-1962) File:Old flag of Sumatra.svg|Flag of Sumatra under Dutch rule File:Flag of Perhimpunan Indonesia.png|Flag of
Perhimpoenan Indonesia File:Flag of Indische Partij.svg|Flag of
Indische Partij File:TDKGM 02.44 Bendera Tamansiswa.jpg|Flag of the
Taman Siswa Association
World War II flags File:Flag of Japan (1870–1999).svg|Flag of the Japanese-occupied of the
Dutch East Indies under
Empire of Japan (1942–1945) File:War flag of the Imperial Japanese Army (1868–1945).svg|War flag of the
Imperial Japanese Army (1942–1945) File:Naval ensign of Japan (1889–1945).svg|Naval ensign of the
Imperial Japanese Navy (1942–1945) File:Flag of the Japanese Emperor.svg|Imperial Standard of the
Emperor of Japan (1942–1945) File:Flag of PETA (Pembela Tanah Air).svg|Flag of
PETA / Pembela Tanah Air (1943–1945) File:Flag of PETA Giyugun Bali.svg|Flag of
PETA / Giyūgun Bali (1944–1945)
Indonesian National Revolution File:Hotel Yamato flag.svg|
Hotel Yamato flag File:Flag of Indonesian Hizbullah.png|Banner (
panji) variant of
Laskar Hizbullah File:Flag of Legion of Ratu Adil.svg|
Legion of the Just Ruler File:Flag of Angkatan Pemuda Indonesia.svg|
Indonesian Youth Force File:Symbol of Laskar Napindo.svg|Symbol of
Laskar Napindo File:Flag of GPST.svg|
Central Sulawesi Youth Movement File:Flag of Laskar Sunda Kecil.svg|Laskar Sunda Kecil File:Flag of Bung Tomo.svg|
Indonesian People's Revolutionary Front File:Bendera Pesindo.svg|
Indonesian Socialist Youth File:Bendera SOBSI.svg|
Central All-Indonesian Workers Organization File:Flag of TRIP 45 Museum.svg|
Tentara Republik Indonesia Pelajar (TRIP;
East Java) == Flags of separatist movements and terror groups ==