Jackson continued in his coaching role at Shrewsbury, and was named as
caretaker manager for the final match of the 2009–10 season following the dismissal of
Paul Simpson. He resumed his coaching role under new manager
Graham Turner, and was appointed as caretaker manager again following Turner's resignation on 22 January 2014. A month later, he was given the managerial position on a contract running until the end of the
2013–14 season, but was unable to save the team from relegation to
League Two. Despite this, the club opted to retain his services as assistant to new manager
Micky Mellon, alongside goalkeeping coach
Danny Coyne. before once again being appointed as his assistant again at Tranmere shortly afterwards. Following Mellon's departure to
Dundee United, Jackson was named manager of Tranmere Rovers on 18 July 2020. He was sacked on 31 October 2020. In July 2021, Jackson was appointed interim manager of the
Burnley Under-23s team. On 15 April 2022, after
Sean Dyche was dismissed,
Burnley appointed Jackson as caretaker manager for their
away match against
West Ham United, which they
drew 1–1 two days later. After a 2–1 win away at
Watford on 30 April 2022, Jackson became the first Burnley manager to win three of his first four league games in charge since
Jimmy Mullen in October 1991. He won the
Premier League Manager of the Month award for April after leading relegation-threatened Burnley to three wins and one draw. However, the team were
relegated to the
Championship at the end of the
2021–22 season after suffering three losses in their last four matches. On 30 April 2026, following the departure of previous manager
Scott Parker, Jackson was appointed interim head coach of Burnley until the end of the
season. ==Managerial statistics==