Silberbauer became an assistant at
Swiss Super League club
Luzern in 2016. He remained with the club through the
2018–19 Swiss Super League season. On 20 August 2018, Silberbauer was announced as the first head coach of
Pacific FC of the
Canadian Premier League on a two-year contract, beginning January 2019. On 28 April 2019, he coached Pacific to a 1–0 victory in its first ever game over
HFX Wanderers. He parted ways with the club on 18 October the same year. On 17 August 2020 it was confirmed, that Silberbauer had returned to Denmark and joined
Midtjylland as an assistant coach for the club's successful U-19 team. On 15 June 2021, Swiss club
Basel announced that Silberbauer had been hired on a deal for the 2021–22 season, as the club's new assistant coach under head coach
Patrick Rahmen. He left the club at the end of 2022. On 24 March 2022, he joined
Utrecht, also as assistant, under manager
Rick Kruys. Ahead of the 2022–23 season, Silberbauer returned to his homeland and joined his former club,
Midtjylland, as a first team assistant coach. On 28 December 2022, Silberbauer returned to Utrecht, this time as head coach, agreeing upon a 2.5-year contract. On 29 August 2023, Silberbauer was fired after losing the first three Eredivisie matches. On 14 February 2024 German
Bundesliga club
Mainz 05 confirmed that Silberbauer had joined the club as assistant coach under Danish head coach
Bo Henriksen, whom he knew from their time together at
FC Midtjylland. ==Career statistics==