Mission Prep has sport programs for: football, cross country running, tennis, softball, volleyball, basketball, soccer, golf, swim and dive, track and field, and baseball. The school's mascot is the Royals. Mission Prep is frequently in the CIF playoffs, holding many banners for basketball, volleyball, soccer, and cross country running. Among their star athletes was
Jordan Hasay. Mission Prep currently holds the CIF record for most consecutive CIF championships in any sport with 16 straight in girls' basketball. Mission hosts an annual basketball tournament known as the "Christmas Classic". In this tournament, teams from across the country have come to play.Also their has been some international basketball academies that have played in this tournament as well. Starting in the 2018-19 season, Mission Prep, as well as other
Central Coast Athletic Association schools, had moved to the CIF Central Section. In the 2018–19 football season, Mission Prep cruised to the CIF Central Section 8-Man title, with an undefeated season, the first sectional title for football in school history. In 2018-19, the women's tennis team also won a CIF Central Section title, their first as well. ==The painting of the M==