UPB-MyTeam Hodak's coaching career began in Malaysia in 2006 with the now-defunct
UPB-MyTeam, where he guided them to promotion into the
Malaysian Super League. There he was responsible for the development of UPB-MyTeam's very young squad, which produced many Malaysian national players, including
Norshahrul Idlan Talaha,
Shakir Shaari,
Bunyamin Umar,
Syed Adney Syed Hussein,
Stanley Samuel,
Azmi Muslim,
Nazrin Nawi and
Azamuddin Akil.
Phnom Penh Crown With
Phnom Penh Crown, he won the
Cambodian League and qualified for the
AFC President's Cup Final Round for the first time in
Cambodian football history.
Shandong Taishan With
Shandong Taishan, he won the Reserve CSL and he was assistant coach in the First team that lost the
Chinese FA Cup final 2–1 to
Tianjin Teda.
Kelantan Hodak was appointed manager and head coach of
Kelantan in February 2012. He made Kelantan history during his debut season, guiding them to a historic treble of the
Malaysian FA Cup,
Malaysian Super League and
Malaysia Cup. The team also qualified for the
2012 AFC Cup quarter-finals where they lost to
Arbil FC of
Iraq, 3–6 on aggregate. In his second season with Kelantan, despite losing six key players, the team managed to retain the
FA Cup, but lost the league championship to
LionsXII and
Malaysia Cup final to
Sri Pahang. He left the team after the conclusion of the 2013 season.
Johor Darul Takzim With
Johor Darul Ta'zim, he won the
2014 Malaysia Super League and qualified for the
AFC Cup. The team collected 44 points from 22 matches and beat Sarawak 1–0 at Stadium Negeri Sarawak, Kuching. In January 2015, he guided JDT to the Charity Shield after JDT beat Pahang 2-0.
Penang Hodak was appointed
CEO of
Penang in May 2016 with the target to save Penang from relegation. Penang were bottom of the Malaysian Super League with only 6 points from 11 matches. He signed
Nenad Baćina as head coach, changed three players and the team started improving. In the second half of the season, Penang was one of the best teams, winning 16 points, with only
Johor Darul Ta'zim and
Kedah Darul Aman winning more points in these 11 matches. The team managed to stay in Malaysian Super League in 2016. After Hodak left at the end of the 2016 season, Penang was relegated the next season, after collecting only 12 points From 22 matches.
Malaysia U19 National Team With
Malaysia U-19, Hodak achieved best results in the history by winning
AFF U-19 Championship in 2018. Before that, in 2017 he was runner Up in same age group and manage to qualify for AFC U-19 Championship 2017.
PSM Makassar On the last day of 2019 (31 December 2019),
PSM Makassar officially announced Bojan Hodak as their new coach for the upcoming 2020 season.
Kuala Lumpur City Bojan helped the City Boys reached their first cup final after 22 years (since 1999 Malaysia FA Cup). On top of that,
Kuala Lumpur City put an end to the 32-year drought of Malaysia Cup (last won in 1989) by winning the 2021 Malaysia Cup final by beating the overwhelming favourites JDT 2–0 at the Bukit Jalil National Stadium. As title holders of the Malaysia Cup, Kuala Lumpur City qualified to play in the 2022 AFC Cup campaign via cup competition after Malaysia FA Cup was abandoned due to
COVID-19 pandemic. Bojan led the team to the
final, where they have to finish as the runner-up after losing 0–2 to Omani club
Al-Seeb. Bojan's last match for the team was the
final of the
2023 Malaysia FA Cup against Johor Darul Ta'zim which ended in their loss of 0–2. In 26 July 2023, four days after the match, Bojan announced his resignation.
Persib Bandung In the same day of Bojan's resignation announcement from Kuala Lumpur City,
Persib Bandung introduced him as the new head coach to replace
Luis Milla. At the moment of his arrival, Maung Bandung was struggling in their
2023–24 Liga 1 campaign. They were down in the relegation zone, positioned 16th out of 18 teams. Under Bojan, Persib had managed to breach out of the bottom and managed to qualify for the championship series after finishing second in the regular series standings. Persib was finally able to emerge as champions after winning 6–1 in aggregate against
Madura United in the
finals. Bojan made club history as the first foreign head coach to win a league title. In addition, he was awarded as the season's Best Coach. Bojan made another history in the
2024–25 season as he led Persib to a back-to-back championship. The team sealed the title in Matchday 31 after both contenders
Dewa United and
Persebaya Surabaya failed to secure a win in their fixtures, leaving them ten points behind Persib with only three matches left to be played. This achievement had placed Bojan in par with
Indra Thohir as the only other Persib head coach to win consecutive league titles by winning the 1993–94 Perserikatan and the
1994–95 Liga Indonesia. ==Managerial statistics==