Noheiji Station was opened on 1 September 1891 as a station of the
Nippon Railway. It was nationalized on 1 July 1906 and became a station of the
Japanese Government Railways Tōhoku Main Line. On 20 March 1921, it became the southern terminus of the Ōminato Line. After the end of
World War II, the JGR became the
Japanese National Railways (JNR). On 15 March 1954 an
F-84 Thunderjet from nearby
Misawa Air Base crashed on top of Noheji Station, destroying the station building and killing twelve people. The explosion left a crater three meters wide and two meters deep, and set fire to one of the carriages of the Tōhoku Main Line. Platforms 1 through 3 were also destroyed. The pilot ejected, but his parachute failed to open and he was also killed. From 5 August 1968, the
Nanbu Jūkan Railway began operations from Noheji (operations ended in 1997). With the privatization of JNR on 1 April 1987, it came under the operational control of JR East. The control of the Tōhoku Main Line (between and Aomori) was transferred to Aoimori Railway on 4 December 2010, the day the
Tōhoku Shinkansen was extended to . ==Services==