Proton gradients in particular are important in many types of cells as a form of energy storage. The gradient is usually used to drive ATP synthase,
flagellar rotation, or
metabolite transport. This section will focus on three processes that help establish proton gradients in their respective cells:
bacteriorhodopsin and noncyclic photophosphorylation and oxidative phosphorylation.
Bacteriorhodopsin The way
bacteriorhodopsin generates a proton gradient in
Archaea is through a
proton pump. The proton pump relies on proton carriers to drive protons from the side of the membrane with a low H+ concentration to the side of the membrane with a high H+ concentration. In bacteriorhodopsin, the proton pump is activated by absorption of
photons of 568nm
wavelength, which leads to
isomerization of the
Schiff base (SB) in
retinal forming the K state. This moves SB away from Asp85 and Asp212, causing H+ transfer from the SB to Asp85 forming the M1 state. The protein then shifts to the M2 state by separating Glu204 from Glu194 which releases a proton from Glu204 into the external medium. The SB is
reprotonated by Asp96 which forms the N state. It is important that the second proton comes from Asp96 since its
deprotonated state is unstable and rapidly reprotonated with a proton from the
cytosol. The protonation of Asp85 and Asp96 causes re-isomerization of the SB, forming the O state. Finally, bacteriorhodopsin returns to its resting state when Asp85 releases its proton to Glu204.
Photophosphorylation PSII also relies on
light to drive the formation of proton gradients in chloroplasts, however, PSII utilizes vectorial redox chemistry to achieve this goal. Rather than physically transporting protons through the protein, reactions requiring the binding of protons will occur on the extracellular side while reactions requiring the release of protons will occur on the intracellular side. Absorption of photons of 680nm wavelength is used to excite two electrons in
P680 to a higher
energy level. These higher energy electrons are transferred to protein-bound
plastoquinone (PQA) and then to unbound plastoquinone (PQB). This reduces plastoquinone (PQ) to plastoquinol (PQH2) which is released from PSII after gaining two protons from the stroma. The electrons in P680 are replenished by oxidizing
water through the
oxygen-evolving complex (OEC). This results in release of O2 and H+ into the lumen, for a total reaction of
Oxidative phosphorylation Main article:
Oxidative phosphorylation In the electron transport chain,
complex I (CI)
catalyzes the
reduction of
ubiquinone (UQ) to
ubiquinol (UQH2) by the transfer of two
electrons from reduced
nicotinamide adenine dinucleotide (NADH) which translocates four protons from the mitochondrial matrix to the IMS: \ce{NADH} + \ce{H^+} + \ce{UQ} + 4\underbrace{\ce{H^+}}_{\mathrm{matrix}} \longrightarrow \ce{NAD^+} + \ce{UQH_2} + 4\underbrace{\ce{H^+}}_{\mathrm{IMS}}
Complex III (CIII) catalyzes the
Q-cycle. The first step involving the transfer of two electrons from the UQH2 reduced by CI to two molecules of oxidized
cytochrome c at the Qo site. In the second step, two more electrons reduce UQ to UQH2 at the Qi site. The total reaction is: 2\underbrace{\text{cytochrome c}}_{\text{oxidized}}+\ce{UQH_2}+2\underbrace{\ce{H^+}}_{\text{matrix}}\longrightarrow2\underbrace{\text{cytochrome c}}_{\text{reduced}}+\ce{UQ}+4\underbrace{\ce{H^+}}_{\text{IMS}} Complex IV (CIV) catalyzes the transfer of two electrons from the cytochrome c reduced by CIII to one half of a full oxygen. Utilizing one full oxygen in oxidative phosphorylation requires the transfer of four electrons. The oxygen will then consume four protons from the matrix to form water while another four protons are pumped into the IMS, to give a total reaction 2\text{cytochrome c}(\text{reduced})+4\ce{H+}(\text{matrix})+\frac{1}{2}\ce{O2}\longrightarrow2\text{cytochrome c}(\text{oxidized})+2\ce{H+}(\text{IMS})+\ce{H2O} == See also ==