MarketPseudomonadota
Company Profile

Pseudomonadota

Pseudomonadota is a major phylum of gram-negative bacteria. They include pathogenic and free-living (non-parasitic) genera. The phylum comprises six classes Acidithiobacillia, Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Hydrogenophilia, and Zetaproteobacteria. The Pseudomonadota are widely diverse, with differences in morphology, metabolic processes, relevance to humans, and ecological influence.

Classification
American microbiologist Carl Woese established this grouping in 1987, calling it informally the "purple bacteria and their relatives". The group was later formally named the 'Proteobacteria' after the Greek god Proteus, who was known to assume many forms. In 2021 the International Committee on Systematics of Prokaryotes designated the synonym Pseudomonadota, and renamed many other prokaryotic phyla as well. The phylum Pseudomonadota encompasses classes Acidithiobacillia, Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Hydrogenophilia, and Zetaproteobacteria. Others are free-living (non-parasitic) and include many of the bacteria responsible for nitrogen fixation. Previously, the Pseudomonadota phylum included two additional classes, namely Deltaproteobacteria and Oligoflexia. However, further investigation into the phylogeny of these taxa through genomic marker analysis demonstrated their separation from the Pseudomonadota phylum. Deltaproteobacteria has been identified as a diverse taxonomic unit, leading to a proposal for its reclassification into distinct phyla: Desulfobacterota (encompassing Thermodesulfobacteria), Myxococcota, and Bdellovibrionota (comprising Oligoflexia). Noteworthy pathogenic genera within this class include Campylobacter, Helicobacter, and Arcobacter. Analysis of phylogenetic tree topology and genetic markers revealed the direct divergence of Epsilonproteobacteria from the Pseudomonadota phylum. ==Taxonomy==
Taxonomy
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). The group Pseudomonadota is defined based on ribosomal RNA (rRNA) sequencing, and are divided into several subclasses. These subclasses were regarded as such for many years, but are now treated as various classes of the phylum. These classes are monophyletic. The genus Acidithiobacillus, part of the Gammaproteobacteria until it was transferred to class Acidithiobacillia in 2013, In 2017, the Betaproteobacteria was subject to major revisions and the class Hydrogenophilalia was created to contain the order Hydrogenophilales e.g.: • Acidithiobacillia: Acidithiobacillus, ThermithiobacillusAlphaproteobacteria: Brucella, Rhizobium, Agrobacterium, Caulobacter, Rickettsia, Wolbachia, etc. • Betaproteobacteria: Bordetella, Ralstonia, Neisseria, Nitrosomonas, etc. • Gammaproteobacteria: Escherichia, Shigella, Salmonella, Yersinia, Buchnera, Haemophilus, Vibrio, Pseudomonas, Pasteurella, etc.Zetaproteobacteria: Mariprofundus ==Characteristics==
Characteristics
Pseudomonadota are a diverse group. Though some species may stain Gram-positive or Gram-variable in the laboratory, they are nominally Gram-negative. Their unique outer membrane is mainly composed of lipopolysaccharides, which helps differentiate them from the Gram-positive species. Most Pseudomonadota are motile and move using flagella. Many move about using flagella, but some are nonmotile, or rely on bacterial gliding. Pseudomonadota have a wide variety of metabolism types. Most are facultative or obligate anaerobes, chemolithoautotrophs, and heterotrophs, though numerous exceptions exist. A variety of distantly related genera within the Pseudomonadota obtain their energy from light through oxygenic photosynthesis or anoxygenic photosynthesis. Some Alphaproteobacteria can grow at very low levels of nutrients and have unusual morphology within their life cycles. Some form stalks to help with colonization, and form buds during cell division. Others include agriculturally important bacteria capable of inducing nitrogen fixation in symbiosis with plants. The type order is the Caulobacterales, comprising stalk-forming bacteria such as Caulobacter. The mitochondria of eukaryotes are thought to be descendants of an alphaproteobacterium. The Betaproteobacteria are highly metabolically diverse and contain chemolithoautotrophs, photoautotrophs, and generalist heterotrophs. The type order is the Burkholderiales, comprising an enormous range of metabolic diversity, including opportunistic pathogens. These pathogens are primary for both humans and animals, such as the horse pathogen Burkholderia mallei, and Burkholderia cepacia which causes respiratory tract infections in people with cystic fibrosis. The Gammaproteobacteria are one of the largest classes in terms of genera, containing approximately 250 validly published names. The bacteria typically use hydrogen gas as an electron donor, but can also use reduced sulfuric compounds. Because of this ability, scientists have begun to use certain species of Hydrogenophilalia to remove sulfides that contaminate industrial wastewater systems. The type order is the Hydrogenophilaceae which contains the genera Thiobacillus, Petrobacter, Sulfuricella, Hydrogenophilus and Tepidiphilus. Currently, no members of this class have been identified as pathogenic. The Zetaproteobacteria are the iron-oxidizing neutrophilic chemolithoautotrophs, distributed worldwide in estuaries and marine habitats. The only confirmed type order for this class is the Mariprofundaceae, which does not contain any known pathogenic species. ==Transformation==
Transformation
Transformation, a process in which genetic material passes from one bacterium to another, has been reported in at least 30 species of Pseudomonadota distributed in the classes alpha, beta, and gamma. The best-studied Pseudomonadota with respect to natural genetic transformation are the medically important human pathogens Neisseria gonorrhoeae (class beta), and Haemophilus influenzae (class gamma). Natural genetic transformation is a sexual process involving DNA transfer from one bacterial cell to another through the intervening medium and the integration of the donor sequence into the recipient genome. In pathogenic Pseudomonadota, transformation appears to serve as a DNA repair process that protects the pathogen's DNA from attack by their host's phagocytic defenses that employ oxidative free radicals. ==Habitat==
Habitat
Due to the distinctive nature of each of the six classes of Pseudomonadota, this phylum occupies a multitude of habitats. These include: • Human oral cavity • Microbial mats in the deep sea • Marine sediments • Agricultural soil • Stem nodules of legumes • Within aphids as endosymbionts • Gastrointestinal tract of warm-blooded species • Brackish, estuary waters • Microbiomes of shrimp and mollusks • Human vaginal tract • Potato rhizosphere microbiome == Significance ==
Significance
Human health Studies have suggested Pseudomonadota as a relevant signature of disease in the human gastrointestinal (GI) tract, by operating as a marker for microbiota instability. Classes Betaproteobacteria and Gammaproteobacteria are prevalent within the human oral cavity, and are markers for good oral health. Changes in the oral microbiome are due to endogenous and exogenous factors like host lifestyle, genotype, environment, immune system, and socioeconomic status. Because of this symbiotic relationship, farmers have the ability to increase their crop yields. Members of Pseudomonadota have vast metabolic abilities that allow them to utilize and produce a variety of compounds. Bioleaching, done by various Thiobacillus species, is an example of this. Any iron and sulfur oxidizing species has the potential to uncover metals and low-grade ores that conventional mining techniques were unable to extract. At present, they are most often used for recovering copper and uranium, but researchers are looking to expand this field in the future. The downside of this method is that the bacteria produce acidic byproducts that end up in acid mine drainage. Pseudomonadota can be described as phototrophs, heterotrophs, and lithotrophs. As heterotrophs (examples Pseudomonas and Xanthomonas) these bacteria are effective in breaking down organic matter, contributing to nutrient cycling. Photolithotrophs within the phylum are able to perform photosynthesis using sulfide or elemental sulfur as electron donors, which enables them to participate in carbon fixation and oxygen production even in anaerobic conditions. These Pseudomonadota bacteria are also considered copiotrophic organisms, meaning they can be found in environments with high nutrient availability, such as fertile soils, compost, and sewage. == See also ==
tickerdossier.comtickerdossier.substack.com