Early in July, soon after he brought that steam
sloop-of-war home for wartime duty, he took command of . In September, Wyman assumed command of . That ship, as part of the
Potomac River Flotilla, helped to keep open the Union's vital waterway communications with
Washington, D.C., while cutting off Southern forces from their sympathizers in southern
Maryland. Commanding the
steamer from October 1861, Wyman took part in Flag Officer DuPont's capture of the key seaport of
Port Royal,
South Carolina. After that operation, Wyman returned north and took command of the
Potomac River Flotilla on 6 December 1861. He held this important post until the end of June 1862. During his time in the
Potomac, he was active in maintaining Union control of that vital river and of much of the
Rappahannock during General
McClellan's
Peninsular Campaign. His ships destroyed Southern bridges, captured nine
Confederate ships, and burned 40
schooners. Promoted to commander on 16 July 1862, Wyman was ordered to command the
gunboat on the
James River. Transferred to the
West Indian Squadron the following October, he commanded the steam sloop and the
paddle steamer , and captured the
blockade runners and
Lizzie. During the last two years of the
Civil War, Wyman served on special duty in the
Navy Department in Washington, D.C. ==Later career==