Baqer made his senior international debut on 7 October 2016 in a 3–1 friendly victory over
Philippines. Baqer was included in
Bahrain's squad for the
2019 AFC Asian Cup in the United Arab Emirates. On 14 November 2019, Baqer made a "slit eye" gesture towards the Hong Kong fans in the end of the
2022 FIFA World Cup qualifying match between
Hong Kong and
Bahrain. On 19 December 2019,
FIFA banned Baqer for 10 matches and fined him
CHF 30,000 as a punishment for his "discriminatory behaviour". ==Career statistics==