As a Latin square is a combinatorial object, the symbol set used to write the square is immaterial. Thus, as Latin squares, these should be considered the same: :\begin{matrix} a & b \\ b & a \end{matrix} and \begin{matrix} 1 & 2 \\ 2 &1 \end{matrix}. Similarly, and for the same reason, :\begin{matrix} b & a \\ a & b \end{matrix} and \begin{matrix} 1 & 2 \\ 2 &1 \end{matrix} should be thought of as the same. Thus, :\begin{matrix} a & b \\ b & a \end{matrix} and \begin{matrix} b & a \\ a &b \end{matrix} can not be thought of as different Latin squares. This intuitive argument can be made more precise. The Latin squares :\begin{matrix} a & b \\ b & a \end{matrix} and \begin{matrix} b & a \\ a &b \end{matrix}, are isotopic, in several ways. Let be the involutorial permutation on the set {{math|1=
S = {
a,
b}}} sending to and to . Then the isotopy {{math|{(
a,
b),
id,
id}}} interchanges the two rows of the first square to give the second square ( is the identity permutation). But {{math|{
id, (
a,
b),
id}}}, which interchanges the two columns, is also an isotopy, as is {{math|{
id,
id, (
a,
b)}}}, which interchanges the two symbols. However, {{math|{(
a,
b), (
a,
b), (
a,
b)}}} is also an isotopy between the two squares, and so these squares are isomorphic.
Reduced squares Finding a given Latin square's isomorphism class can be a difficult
computational problem for squares of large order. To reduce the problem somewhat, a Latin square can always be put into a standard form known as a
reduced square. A reduced square has its top row elements written in some natural order for the symbol set (for example, integers in increasing order or letters in alphabetical order). The left column entries are put in the same order. As this can be done by row and column permutations, every Latin square is isotopic to a reduced square. Thus, every isotopy class must contain a reduced Latin square, however, a Latin square may have more than one reduced square that is isotopic to it. In fact, there may be more than one reduced square in a given isomorphism class. For example, the reduced Latin squares of order four, :\begin{matrix} 1 & 2 & 3 & 4 \\ 2 & 4 & 1 & 3 \\ 3 & 1 &4&2\\4&3&2&1 \end{matrix} and \begin{matrix} 1 & 2 &3&4\\ 2 &1&4&3\\3&4&2&1\\4&3&1&2 \end{matrix} are both in the isomorphism class that also contains the reduced square :\begin{matrix} 1 & 2 & 3 & 4 \\ 2 & 3 & 4 & 1 \\ 3 & 4 &1&2\\4&1&2&3 \end{matrix}. This can be shown by the isomorphisms {(3,4), (3,4), (3,4)} and {(2,3), (2,3), (2,3)} respectively. Since isotopy classes are disjoint, the number of reduced Latin squares gives an upper bound on the number of isotopy classes. Also, the total number of Latin squares is times the number of reduced squares. One can normalize a Cayley table of a quasigroup in the same manner as a reduced Latin square. Then the quasigroup associated to a reduced Latin square has a (two sided)
identity element (namely, the first element among the row headers). A quasigroup with a two sided identity is called a
loop. Some, but not all, loops are groups. To be a group, the associative law must also hold. ==Isotopy invariants==