he U.S. Fish and Wildlife Service has listed the Sonoyta mud turtle as endangered under the Endangered Species Act in 2017 and designated critical habitat in 2019. Today there are only five known populations: one in Arizona and four in Sonora, Mexico. The subspecies
Kinosternon sonoriense longifemorale is also listed as endemic and in danger of extinction under Mexico's Norma Oficial Mexicana. In 2023 the IUCN listed the Sonora mud turtle as vulnerable under criteria A4c. The species is vulnerable to predation by non-native species such as American Bullfrogs, Largemouth Bass, and crayfishes. In many areas its aquatic habitats have disappeared due to water diversions and groundwater pumping. The only U.S. population of the subspecies Sonoyta mud turtle, around 150 individuals, lives in a small spring-fed pond at
Quitobaquito Springs in
Organ Pipe Cactus National Monument, just over 100 yards from the U.S.-Mexico border. Following the
2019 National Emergency Concerning the Southern Border of the United States (Proclamation 9844) the Secretary of Homeland Security issued waivers for all legal activities in the vicinity of the Sonoyta mud turtle's known range. The construction of the boarder wall included pumping of groundwater to mix concrete sparking fears that the small ponds could dry up. Following the completion of this section of border wall in 2020 the pond had dropped 15 inches with the spring’s flow reaching an historic low of 5.5 gallons per minute. As of 2025 the population has stabilized at around 130 individuals. A captive breeding program by the
Arizona-Sonora Desert Museum is considering introducing some 50 individuals to aid in recovery efforts. == Subspecies ==