The Pomarine Jaeger is most closely related to the larger skuas (species formerly placed in a separate genus
Catharacta:
Great Skua,
Chilean Skua,
Brown Skua, and
South Polar Skua). Together, the Pomarine Jaeger and the larger skuas are sister to the two smaller skua species, the
Parasitic Jaeger and
Long-tailed Jaeger. The evolutionary relationships of the Pomarine Jaeger were formerly controversial. Based on plumage similarity between the Pomarine Jaeger and the two smaller jaegers (
Long-tailed Jaeger and
Parasitic Jaeger), the three jaegers were formerly placed in a separate genus from the larger skuas (with the jaegers in
Stercorarius and the larger skuas in the former genus
Catharacta). However, behavioural evidence was recognized early on as suggesting a link between the Pomarine Jaeger and the larger skuas: for example, both Pomarine Jaeger and Great Skuas perform wing-raising displays, a behaviour that is absent in the two smaller jaegers. Skeletal data also hinted at a closer relationship between Pomarine Jaeger and the larger skuas. Later, the
mitochondrial DNA of the Pomarine Jaeger was found to be most similar to the
Great Skua, not the smaller jaegers. Based on these patterns, it was proposed that the Pomarine Jaeger originated through
hybridization between the Great Skua and either the Long-tailed or Parasitic Jaeger; or alternatively, that the
Great Skua originated through hybridization of the Pomarine Jaeger and one of the southern hemisphere skuas. Under the hybrid origin scenarios, the hybrid population would have eventually evolved into a distinct species.
Whole genome sequencing later revealed that the mitochondrial DNA similarity between the Pomarine Jaeger and the Great Skua was most likely due to
hybrid introgression from the Pomarine Jaeger into the
Great Skua, with the mitochondrial DNA of the Pomarine Jaeger replacing that of the Great Skua. The whole genome data rejected a hybrid origin for the Pomarine Jaeger, with no evidence of Parasitic Jaeger or Long-tailed Jaeger ancestry within the Pomarine Jaeger, but instead supported a low level of
hybrid introgression between the Pomarine Jaeger and
Great Skua. ==Etymology==