An. gambiae s.s.
genomes have been sequenced three times, once for the M strain, once for the S strain, and once for a hybrid strain. Currently, ~90 miRNA have been predicted in the literature (38 miRNA officially listed in miRBase) for
An. gambiae s.s. based upon
conserved sequences to miRNA found in
Drosophila. Holt
et al., 2002 and Neafsey
et al., 2016 find
transposable elements to be ~13% of the genome, similar to
Drosophila melanogaster (also in
Diptera). However they find the proportion of TE types to be very different from
D. melanogaster with approximately the same composition of
long terminal repeat retrotransposons,
non-long terminal repeat retrotransposons and
DNA transposons. See below for their applications.
An. gambiae has a high degree of
polymorphism. This is especially true in the
cytochrome P450s, Wilding
et al., 2009 finding 1
single nucleotide polymorphism (SNP)/26
base pairs. This species has the highest amount of polymorphism in the CYPs of any insect known, much tending to be found in "scaffolds" that are found only in particular subpopulations. These are termed "dual haplotype regions" by Holt
et al., 2002 who sequenced the strain. In common with many chromosomes,
An. gambiae codes for
spindle and kinetochore-associated proteins. Hanisch
et al., 2006 locate
AgSka1, the
spindle and kinetochore-associated protein 1 gene, at
EAL39257. The entire
Culicidae family may or may not conserve
epigenetic mechanisms this remains unresolved. Toward answering this question, Marhold
et al., 2004 compare their own previous work in
Drosophila melanogaster against new sequences of
D. pseudoobscura and
An. gambiae. They find all three do share the
DNA methylation enzyme
DNMT2 (
DmDNMT2,
DpDNMT2, and ''''). This suggests all
Diptera may conserve an epigenetic system employing Dnmt2. ==Hosts==