The
Floridan Aquifer underlies the Dougherty Karst Plain, and is
recharged from surface water as well as discharging to springs and rivers on the plain. In the northernmost Chipola watershed the Floridan Aquifer is relatively thin at , consisting of just the
Ocala Limestone. The aquifer thickens to the south, reaching about thickness at the southern edge of the Dougherty Karst Plain, with the younger
Marianna,
Suwannee, and
Chattahoochee formations above the Ocala Limstone. The top of the Floridan Aquifer along the Chipola River is about above sea level, and rocks of the formations making up the aquifer are often exposed in the bed of the river. The
potentiometric surface of the aquifer is close to the ground level of the river's
floodplain, indicating that water from the aquiver also contributes directly to the river's flow.
Basins The Northwest Florida Water Management District has divided all but the northernmost part of the Chipola watershed into basins and sub-basins for the purposes of studying water quality, water supply, and natural aquatic habitat area. The Merritts Millpond-Chipola River basin, which includes
Greenwood, parts of
Jacob and
Cottondale, and much of Marianna, is divided into the Waddells Mill Creek, Hayes Spring Run, Muddy Branch-Chipola River, Carters Mill Branch, and Merritts Millpond sub-basins, and has significant areas of water affected by pollution and
algal mats and large numbers of assets subject to flooding. The Mill Creek-Chipola River basin, which includes
Alford, the northern part of
Altha, and the southern parts of Cottondale and Marianna, is divided into the Sapp Bay, Stump Creek, Upper Dry Creek-Chipola River, Lower Dry Creek-Chipola River, Foxworth Mill Creek, Douglas Pond, Rocky Creek-Chipola River, and Mill Creek-Chipola River sub-basins, and has limited areas of water affected by pollution and algal mats and a moderate number of assets subject to flooding. The Chipola River-Tenmile Creek basin includes the southern part of Altha and is divided into the Upper Tenmile Creek, Lower Tenmile Creek, Fourmile Creek-Chipola River, Davis Creek, and Juniper Creek-Chipola River sub-basins and has significant areas of water impaired by bacteria and a moderate number of assets subject to flooding. The Dead Lakes basin includes
Wewahitchka and is divided into the Old Camp Four Swamp, Cypress Creek-Dead Lakes, Upper Dead Lakes, Lower Dead Lakes, West Arm of the Dead Lakes, and Douglas Slough sub-basins, and has moderate areas of water affected by pollution and algal mats and a moderate number of assets subject to flooding. It is also at risk of
storm surges.
Springs A survey of springs in the Chipola River basin conducted in 2002/2003 identified 63 springs, all fed from the Floridan Aquifer in the Dougherty Karst District. Many of the springs are in or adjacent to the river bed, and are difficult to locate when flow rates are low. The Jackson Blue Spring is rated as a first-magnitude spring, nine springs are rated as second-magnitude, seven as third-magnitude, and five as fourth-magnitude. The outflow of some springs cannot be measured because they discharge directly into flow of the Chipola or one of its tributaries. Most of the flow of the Chipola River originates from the springs. ==History==